Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1026 ATGCTTATTGTCCAAAAAGCATTGAGAAGATTAACAAGTGAGAAAAGTGTTATTCCTGGTCGTCTGGGGTTGCCGCTTCTGGGTGAAACCTTCTCTTTTCTATCAGCCACTGGTAGTACAAAAGGATGCTATGATTTTGTGAGGCTAAGACGACTGTGGCATGGGAAATGGTTCAAGACAAGGATATTTGGCAAGGTCCATGTGTTTGTCCCAACTACTGATGGAGCAAAAACGATTTTCGCTAATGATTTGGTGCTTTTCAATAAGGGTTATGTGAAATCAATGGCAGATGTTGTAGGCAAGAAGAGCTTGCTATGTGTTCCTCAAGAGAGTCACAAAAGGATTAGGCGTCTTCTATCAGATCCTTTCTCCATGAATTCTTTGTCCAAGTTTGTCATGGAATTCGACAACATGCTGTACCAAAGACTCAACAAATTAGAAGAAGGGGGGAAAAGCTTTGTAGTGTTCGACTTCTGTATGAAGATAGCATTTGATGCAATATGCAACAGGCTAATAAGTGTCACCGAGGCTCCCTTGCTACAAGAGATTGAGAGAGACTGTACGTATGTTTCCAATGCTATGTTGTCATTTCCTCTCATGATCCCTGGCACCAGATACTACAAAGGTATCAAGGCAAGAAAACGTCTAATGGAAACCTTTGGAGAGATGATTAGCAGCAGGCGAAGTGGAAAGGAGTACTCTGATGACTTCTTGCAGTCCATGTTACAACGGGATTCATACCCGCCCAGTGAAAAGCTTGAAGACTCAGAGATTATGGATAACCTATTAACACTGATAATTGCAGGACAAACCACCACTGCGGCTGCAATGATGTGGAGTGTCAAGTTCTTGGATGAAAACGAAGAAGTCCAGGATAGGCTAAGGGAAGAGCAACTGTCAATAATCAGAAACAAAGCAGAAGGAGCCTTACTTACCCTTGAAGATCTAAACAGCATGTGCTATGGCTTACAGGTTGTGAAGGAAACATTGAGAATGTCAAATGTTTTATTGTGGTTTCCTCGTGTTGCACTTAATGACTGCAGAATTGAAGGTTTTGAAATAAAGAAAGGATGGCACCTCAACATTGATGCGACTTACATACACTTCGACCATAGTCTGTACAAGGACCCTATACAATTCAATCCTTCGAGATTTGATGAAGTGCCAAAGCCATACAGCTTCATGCCTTTTGGATCAGGACCAAGAACCTGCCTAGGAATTAATATGGCCAAAATGACAATGTTGGTGTTCTTAAGCCGGCTGACCAGTGGATTCAAGTGA 1281 42.0 MLIVQKALRRLTSEKSVIPGRLGLPLLGETFSFLSATGSTKGCYDFVRLRRLWHGKWFKTRIFGKVHVFVPTTDGAKTIFANDLVLFNKGYVKSMADVVGKKSLLCVPQESHKRIRRLLSDPFSMNSLSKFVMEFDNMLYQRLNKLEEGGKSFVVFDFCMKIAFDAICNRLISVTEAPLLQEIERDCTYVSNAMLSFPLMIPGTRYYKGIKARKRLMETFGEMISSRRSGKEYSDDFLQSMLQRDSYPPSEKLEDSEIMDNLLTLIIAGQTTTAAAMMWSVKFLDENEEVQDRLREEQLSIIRNKAEGALLTLEDLNSMCYGLQVVKETLRMSNVLLWFPRVALNDCRIEGFEIKKGWHLNIDATYIHFDHSLYKDPIQFNPSRFDEVPKPYSFMPFGSGPRTCLGINMAKMTMLVFLSRLTSGFK* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18887823 18891508 - Vvi4g1026 Vvi4g1026 785805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1026 426 Gene3D Cytochrome P450 8 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS P450 superfamily signature 268 285 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS P450 superfamily signature 324 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS P450 superfamily signature 395 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS P450 superfamily signature 404 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS E-class P450 group I signature 257 274 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS E-class P450 group I signature 277 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS E-class P450 group I signature 363 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS E-class P450 group I signature 394 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PRINTS E-class P450 group I signature 404 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 424 - -
Vvi4g1026 426 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 397 406 IPR017972 GO:0005506|GO:0016705
Vvi4g1026 426 PANTHER CYTOCHROME P450 26 5 424 - -
Vvi4g1026 426 Pfam Cytochrome P450 23 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1026 426 SUPERFAMILY Cytochrome P450 11 425 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1026 - - - vvi:100259055 855.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26