Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1027 ATGAATAACGCAATCAACTTTTTCTCTGAAACCAAATTGGCCTCCGCCAAGACGGTGTTCTCCACCGCTGCCTCTCTCCTCGCCACCGCTATGGTGTTCCGAAGCGTCCTCCAAGATTTCTTGCCTTACGAAGCCCAGCAAATTTTTTGTTCTGGAATTCGACGCTTGTTCAATCGCTTCTCCCCACAGATGACCATGGTGATCGACGAGTTCGATGGCATCGCTTACAACCAAATCTTCGAGGCTGCCGAGACCTACTTGGGCAGCAAAGTCTGCTCCTCCCAGAGGCTGAGAGTGAGCAGGCCGGCCAAGGAGCGCAAATTCAACATCAACTCCAGGAGTATATACAATCCTCGCGATTTCAACTCCACAATTCGATCCGAAGTTCGATCTTTCGAGCTCAGTTTTCATAAGAAGCATTTGGATATGGTTCTCAATTCCTACTTTCCATACATATTGAAGGAATCAGTATCCTTGATACAAGAGAAGAAGACTTTGAAGCTCTTCACCGTCGATTTCGAAAAAATGTTTGGGAAGATGAGCGATGCCTGGTCATCAATCAGCCTTGATCATCCATCAACTTTTGATACGATCGCCATGGACTCGGAACTAAAGAGCAAAATTTTGGAAGATCTTAAAAGGTTTGTCAGGAGGAGGGATTATTACAAGAAGGTCGGGAAGGCTTGGAAGCGCGGATACTTGCTGTACGGACCTCCTGGTACGGGTAAATCGAGTTTGATCGCCGCCATAGCTAACTATTTGAACTTCGATATATATGATTTGGAGCTCACGGAACTCCGGTGCAACTCCGAGCTGAGGAGGTTGCTGCTTGCGACAGCCAATCGATCAATTCTGGTGGTGGAGGATATTGACTGTACGATTCAGTTGCAAGATCGTTCGGCAGAAAGCCAAGTCATGAATCCACGCTCATTTCAGTTCGAGAAACAGGTGACGCTTTCAGGATTGTTGAATTTTATCGATGGACTTTGGTCAAGCTGCGGTGACGAGCGAATCATAATATTCACAACAAACCACAAAGACAAGCTGGATCCTGCTTTGCTGCGTCCAGGGCTGGCCGAGCATCTACTCCAAAGTGATGAGCCTGAAAAGGCACTCAGAGATTTGATTAAATTCCTCGAAGTGAAGAAGGAAGAGGCTAGGGAAGACGAGGAAGTGAGAATTTACACTCGTAAATATGCCACACATAAGACAGTGAGTTGGGACTCAATCCAACTCCATCATCCGGCAAAGTTTGAGTCCTTTGCCATGGATCCCGATCAAAAGAAGGAGATCATGGAGGATTTGGAGAGAGTTCCAATGGAAACCATAGCTGCTTCTTTCTCAGCAATGCCTGAAATTGCAACCAAATTATTCTCATTCTATGCCTCTCTCCAGGCCTTCATAGTGTTGATCAGAACCATGATCAACGAGCTCATCCCTGACAAGATCCGAACTAATGTTCTCTCTAAGCTTCAAACCTACTGGTTCGCTCCTCCTTTCTCTCAGCTCACTCTCCTCATCGAAGAGGACCATGGGATGACGCCCAACGAAATCTACGATGCTACCCAGGCCTATCTCGACACCAAGATCCCACCTTTCATTGAACGCCTTAAAGTTGGGAAAACCCCAAGGGACAACAATCTCAACGTTACAATCGCAGAGGGCCAAGTGGTTCCCGATTCCTTCGAAAACATCAAGCTCAAGTGGGTGCTCGGTACAAAGCACGATTCCTACGACTACACTGGAGACTGGGGATTCATCACTCTGAAGCATCCGGCCACGTTTGACACTATGGCGATGGATCCGGAACTAAAGAAGGCGATAATTGATGATTTGAATAGGTTTGTTGCGAGGAAGGAGTATTATAAGAGGGTTGGAAAGCCTTGGAAGCGTGGATACTTATTGTACGGTCCTCCAGGCACGGGGAAATCAAGCTTGATTGCAGCCATGGCCAATTATCTCAAGTTTGACATCTACCATGTGGAGCTCAATAGCATTCGCTCCGATAACGAACTCAAGCAGATATTGGTGTCAACTACTAGTAAATCCATGATAGTGATCGAGGATATTGATTGTAATGCGGAGACTCGAGATCGTGGAGACTTTTTGGACCTATATGAGCCCACCATAGCTAAGGTACTGACACTATCGGGCATACTAAATTTCACTGATGGGTTATGGTCAAGTTGCGGAGAGCAGCGAATCATTGTGTTTACCACAAACCACAAGGATCGACTTGCTCCTGCTCTGCTGCGTCCTGGTCGCATGGATATGCATATCTACATGTCTTATTGTACTTACGATGGTTTTAAGACCTTAGCTTCCAATTACCTTGGTGTTACTGACCATCCACTCTTTGGGGAGATCGAAACCCTCCTTAAAAATACGGAGGTTAGTCCGGCAGAAATTGGGGAGGAGTTAATGAGGAGCGATGATGCTGATGTTGCGCTTGGAGGACTTGTTGAATTCATCAACCGGAAAAAGATCGAAGGCAATAGAATGGAGGGAAGAGAAAACGATGATGAACATGAAGTCAGCGGTGAAGGGAGCGGTGAAGAATAA 2562 46.33 MNNAINFFSETKLASAKTVFSTAASLLATAMVFRSVLQDFLPYEAQQIFCSGIRRLFNRFSPQMTMVIDEFDGIAYNQIFEAAETYLGSKVCSSQRLRVSRPAKERKFNINSRSIYNPRDFNSTIRSEVRSFELSFHKKHLDMVLNSYFPYILKESVSLIQEKKTLKLFTVDFEKMFGKMSDAWSSISLDHPSTFDTIAMDSELKSKILEDLKRFVRRRDYYKKVGKAWKRGYLLYGPPGTGKSSLIAAIANYLNFDIYDLELTELRCNSELRRLLLATANRSILVVEDIDCTIQLQDRSAESQVMNPRSFQFEKQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDKLDPALLRPGLAEHLLQSDEPEKALRDLIKFLEVKKEEAREDEEVRIYTRKYATHKTVSWDSIQLHHPAKFESFAMDPDQKKEIMEDLERVPMETIAASFSAMPEIATKLFSFYASLQAFIVLIRTMINELIPDKIRTNVLSKLQTYWFAPPFSQLTLLIEEDHGMTPNEIYDATQAYLDTKIPPFIERLKVGKTPRDNNLNVTIAEGQVVPDSFENIKLKWVLGTKHDSYDYTGDWGFITLKHPATFDTMAMDPELKKAIIDDLNRFVARKEYYKRVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYHVELNSIRSDNELKQILVSTTSKSMIVIEDIDCNAETRDRGDFLDLYEPTIAKVLTLSGILNFTDGLWSSCGEQRIIVFTTNHKDRLAPALLRPGRMDMHIYMSYCTYDGFKTLASNYLGVTDHPLFGEIETLLKNTEVSPAEIGEELMRSDDADVALGGLVEFINRKKIEGNRMEGRENDDEHEVSGEGSGEE* 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18902109 18934303 + Vvi4g1027 Vvi4g1027 785806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1027 853 ProSitePatterns AAA-protein family signature. 337 355 IPR003960 GO:0005524|GO:0016887
Vvi4g1027 853 PANTHER - 11 357 - -
Vvi4g1027 853 PANTHER - 444 571 - -
Vvi4g1027 853 PANTHER - 581 838 - -
Vvi4g1027 853 PANTHER - 391 438 - -
Vvi4g1027 853 Pfam Domain associated at C-terminal with AAA 479 571 IPR025753 -
Vvi4g1027 853 Pfam Domain associated at C-terminal with AAA 41 108 IPR025753 -
Vvi4g1027 853 Gene3D - 585 760 IPR027417 -
Vvi4g1027 853 Gene3D - 185 368 IPR027417 -
Vvi4g1027 853 CDD AAA 630 764 - -
Vvi4g1027 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 812 IPR027417 -
Vvi4g1027 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 379 IPR027417 -
Vvi4g1027 853 PANTHER BCS1 AAA-TYPE ATPASE 391 438 - -
Vvi4g1027 853 PANTHER BCS1 AAA-TYPE ATPASE 581 838 - -
Vvi4g1027 853 PANTHER BCS1 AAA-TYPE ATPASE 11 357 - -
Vvi4g1027 853 PANTHER BCS1 AAA-TYPE ATPASE 444 571 - -
Vvi4g1027 853 CDD AAA 210 357 - -
Vvi4g1027 853 SMART AAA_5 229 369 IPR003593 -
Vvi4g1027 853 SMART AAA_5 629 766 IPR003593 -
Vvi4g1027 853 Gene3D - 761 833 - -
Vvi4g1027 853 Coils Coil 369 389 - -
Vvi4g1027 853 MobiDBLite consensus disorder prediction 831 853 - -
Vvi4g1027 853 Pfam ATPase family associated with various cellular activities (AAA) 634 763 IPR003959 GO:0005524|GO:0016887
Vvi4g1027 853 Pfam ATPase family associated with various cellular activities (AAA) 234 361 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1027 - - K08900 vvi:100241950 713.761
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000988 5 1 1 3 2 3 2 3 3 3 2 3 4 2 3 3 3 3 3 3 3 3 2 3 3 3 3 3 3 3 84