Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1028 ATGGTGGATGCTGTTGTTACTGTGTTCCTAGAGAAACTGCTCAATGCTCTTGAAGAGGAGGGCCGCGTTCTGTTCGATTTCAGAGAGCAGTTTGAAAGATTACGAGATGAGCTGCGGCTCATGCAAAGCTTCCTCAAAGATGCAGAGAGGCTGAAAAGGAAAAACGAGACTCTTCGGACGGTGATGATTGGTTTGCGGGAGCTGATCTATGAAGCTGAAGATATACTTGCGGATTGCAAAGTTCAATCGGAGGGGAGCCAAGACATCTCCGGTTGGTATGCTGTGTGTTTCTATCCTACTAACCTTCCTTTCAAGTATCAAACTGGAAAGCGCCTCAGAGAAATCAACGAGAAGATCACTCGGATTAAACAAAATATCCCGTCTTTCCTTGGAGTGCCGATTCTAAGCCAAGCCGAGATTGCAGATTCACGGAACCTCCCAGTAGATAGATGGAGCTCTTCTGTGTTTGACCATTCCCAAGTGGTTGGGATAGAGGGTGACACAAGGAAGGTAAAGAACTGGCTGTTGGAAGCCAAGGATGGAATCCTAGCAATTGGAGTTGTGGGCATGGGTGGGGTTGGGAAGACTACTTTGGCTCAAGTGGTCTTCAATGACAGGGAAATGGAGGCTCGTTTTGAGAGGAGGATGTGGGTGTCTGTCACTGGGACACCTAATGAAAAACGGATTTTGAGAAGCATGTTGAGGAACTTGGGTGATATGAATGTGGGAGATGATTGTGGTGAGTTGTTGAGGAAAATAAATCAATACCTCTTGGGCAAGAGGTTTTTGCTTGTCATGGATGATGTGGGGGAAAACACAAATACTTGGTGGCGCAAAATCAGCATTTGTACTTCCTCTGAACTGGAGAACATTGGGAGGGAGATTGTACATAAATGTGGGGGCCTCCCATTAGCAATTAAGGCAGCTGGAGGAATGATGCTCTATCAACAACCTTATTATCATGACTGGAAGCGAATTGCAGACCATTTTCGGGATGAATTGGCAGAAGAGGATGGTTCTGTCATGGCTTCACTCGAATTAAGTTATGAGGAACTCCCATCTCACCTCAAGTCATGCTTCCTCTGTTTGTCTCTTTATCCAGAGGACTGCGAAATAACCAAAGAGCAATTGATTCATTGGTGGATTGCAGAGGGTTTTGTCCCACTGAGAAGAGGCAGATTATCAACTGAAGCTGGGGAGGATTGTTTCTCAGGGTTAACAAATCGTTGTTTGATAGAAGTCGTTGAAAAGAGTTATACTGGAGCAATACAAACCTGCAAAATTCATGATATGGTTCGGGATTTAGTGATCAAGAAGGCGGAAGATGATGCGTTCTCTGGACCAACAACTGCAAGTTGTCGCCATTTGGGTATTGAAGGTGATATCGACAGAAAGTACGATATGCCAAATCAGAAGCTGCGTGCATTATTGTCCACAATCAAGACTGGAGAAGTGAACAAGGTTGCTTCAAGCAATGCAAAAAAGTTCTGTGATTGCCGATACCTGCGGGTGTTAGATATCTCCAAAACGATCTTTGATAAGTCTCTCACAGGTTTATTGGATCATATTGGATTCCTCCAACACTTAACTTATCTCAGCTTAAGCAACACACATCCATTGACTGAAGTTCCACCTGCACTAGAGGAGCTCCGCAACCTTCAGGTATTGGATTTAAGTTACTGTCAGAATTTGAAAATGCTCCCCTCTTATGTTACAACTTTTGAGAAGCTCACAGTGTTAGATGTGAGTCATTGTGGTTCACTTCGATACCTTCCCAAAGGCCTGGGGAGCCTTTCAAATCTTCAAATATTATTGGGGTTTAAACCTGCAAAATCAAATCAATTAGAAGGTTGTCGGATTGCTGAGTTAAGAAGCTTGACTAAGCTTAGGAGACTTGGCTTACAACTAACTCAGGGTGATGAGATTGGAGACAATGACGACAATGTATTGGTAGGTCTCCGAGGACTTCAATTTCTGGTAATTAGTTGTTTTGACAGTCACGGTGATGACCTGATACCCAAACTGGATAAACTCTCTCCTCCCCAACAGCTCCATGAGCTCTCTCTCAGATTTTATCCAGGAAAGATGAACCCAGGCTGGCTAAACCCTTTTTCACTTCCTATCTTAAGGTATCTTTCAATCTCTTCAGGAAACCTTACAAACATGAGCCAACGTTTCTGGGGTGATGGTGACAATACCTGGAAAATTGAGGGCTTAATGTTGGAATCACTATCCGATTTGGGAATGGAATGGTCTATGGTGCAACAAGTGATGCCAAGACTGAGAATTGTGAATGTTAGTTGGTGTCCAGATTTGGACTCATTTCCAATTGAAGATGTTGGATTCAGAGGGGGAGTTCTTGTTATAGAGAAAATGGATCCTGATTCAGTTAAAACGACCTTGTCCAATTTAGCATTTGGAAATGTAATGGCAGCAGCTGCTCGAGATTATCAAAAGGAAGTGCTATCTCAGCAGAAGGCACTAGCTTCCAGTTCAATCAATCAGGAGGTTGATCTTGATGAGTTAATGGATGATCCAGAGCTGGAAAGATTGCATGCAGATAGGATTGCAGCTCTTAAGAAAGAAGCTGAGAAGCGACAGGCTTTAAAGAAGCAAGGGCATGGAGAATACAGGGAGGTAACTGAGGCGGACTTCTTGGGTGAAGTCACTGGGAGTGAAAAAGTAATTTGCCACTTCTACCATCGGGAGTTCTACCGATGCAAGATAATGGATAAGCATTTGAAATCCCTTGCACCAAGGCATATGGACACCAAGTTTATCAAGCTGGATGCAGAGAATGCACCATTCTTTGTCGCTAAACTAGGAGTCAAAACTTTGCCTTGTGTCATCTTATTCAGAAAAGGGATTGCAGTAGATAGGTTGATCGGGTTTCAAGATATGGGAGGAAAAGATGATTTCGCCACGAGGACACTCGAGGCTCTACTTATAAAGAAAGGTATAGTTAGTGAGAAGAAAAAAGATGAAGATGATGAAGACGGGGGTTATCCTGAAAGTAGACGCAACACAGTGAGATCATCTGTGGATCCAAACTCTGATTCAGACTGA 3066 43.51 MVDAVVTVFLEKLLNALEEEGRVLFDFREQFERLRDELRLMQSFLKDAERLKRKNETLRTVMIGLRELIYEAEDILADCKVQSEGSQDISGWYAVCFYPTNLPFKYQTGKRLREINEKITRIKQNIPSFLGVPILSQAEIADSRNLPVDRWSSSVFDHSQVVGIEGDTRKVKNWLLEAKDGILAIGVVGMGGVGKTTLAQVVFNDREMEARFERRMWVSVTGTPNEKRILRSMLRNLGDMNVGDDCGELLRKINQYLLGKRFLLVMDDVGENTNTWWRKISICTSSELENIGREIVHKCGGLPLAIKAAGGMMLYQQPYYHDWKRIADHFRDELAEEDGSVMASLELSYEELPSHLKSCFLCLSLYPEDCEITKEQLIHWWIAEGFVPLRRGRLSTEAGEDCFSGLTNRCLIEVVEKSYTGAIQTCKIHDMVRDLVIKKAEDDAFSGPTTASCRHLGIEGDIDRKYDMPNQKLRALLSTIKTGEVNKVASSNAKKFCDCRYLRVLDISKTIFDKSLTGLLDHIGFLQHLTYLSLSNTHPLTEVPPALEELRNLQVLDLSYCQNLKMLPSYVTTFEKLTVLDVSHCGSLRYLPKGLGSLSNLQILLGFKPAKSNQLEGCRIAELRSLTKLRRLGLQLTQGDEIGDNDDNVLVGLRGLQFLVISCFDSHGDDLIPKLDKLSPPQQLHELSLRFYPGKMNPGWLNPFSLPILRYLSISSGNLTNMSQRFWGDGDNTWKIEGLMLESLSDLGMEWSMVQQVMPRLRIVNVSWCPDLDSFPIEDVGFRGGVLVIEKMDPDSVKTTLSNLAFGNVMAAAARDYQKEVLSQQKALASSSINQEVDLDELMDDPELERLHADRIAALKKEAEKRQALKKQGHGEYREVTEADFLGEVTGSEKVICHFYHREFYRCKIMDKHLKSLAPRHMDTKFIKLDAENAPFFVAKLGVKTLPCVILFRKGIAVDRLIGFQDMGGKDDFATRTLEALLIKKGIVSEKKKDEDDEDGGYPESRRNTVRSSVDPNSDSD* 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18940306 18950901 + Vvi4g1028 Vvi4g1028 785807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1028 1021 CDD RX-CC_like 3 123 IPR038005 -
Vvi4g1028 1021 Pfam NB-ARC domain 165 286 IPR002182 GO:0043531
Vvi4g1028 1021 PRINTS Disease resistance protein signature 184 199 - -
Vvi4g1028 1021 PRINTS Disease resistance protein signature 256 270 - -
Vvi4g1028 1021 PRINTS Disease resistance protein signature 548 564 - -
Vvi4g1028 1021 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 4 1 282 - -
Vvi4g1028 1021 PANTHER DISEASE RESISTANCE RPP13-LIKE PROTEIN 4 290 782 - -
Vvi4g1028 1021 CDD Phd_like_TxnDC9 872 982 - -
Vvi4g1028 1021 Gene3D Glutaredoxin 867 1001 - -
Vvi4g1028 1021 Gene3D Ribonuclease Inhibitor 470 784 IPR032675 -
Vvi4g1028 1021 Gene3D - 5 126 - -
Vvi4g1028 1021 MobiDBLite consensus disorder prediction 991 1005 - -
Vvi4g1028 1021 PANTHER DISEASE RESISTANCE PROTEIN RP 1 282 IPR044974 GO:0006952
Vvi4g1028 1021 PANTHER DISEASE RESISTANCE PROTEIN RP 290 782 IPR044974 GO:0006952
Vvi4g1028 1021 Gene3D - 152 296 IPR027417 -
Vvi4g1028 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 363 IPR027417 -
Vvi4g1028 1021 Pfam Thioredoxin 879 964 IPR013766 -
Vvi4g1028 1021 Coils Coil 34 61 - -
Vvi4g1028 1021 Gene3D - 344 440 IPR036388 -
Vvi4g1028 1021 MobiDBLite consensus disorder prediction 1006 1021 - -
Vvi4g1028 1021 MobiDBLite consensus disorder prediction 991 1021 - -
Vvi4g1028 1021 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vvi4g1028 1021 SUPERFAMILY Thioredoxin-like 835 989 IPR036249 -
Vvi4g1028 1021 SUPERFAMILY L domain-like 428 776 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1028 - - - vvi:100245534 1472.99
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1028 . . . Bda10g00145 . . . Bma15g00991 . . Cma03g00722 . Car03g00662 . Sed14g1154 . Cpe10g00634 Bhi03g00923 Tan03g2020 Cmetu11g0188 . Hepe04g1548 . . . . . . . . . . . . . . . . . . Blo06g00141 . . Bpe10g00126 . . . . Cmo03g00749 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004628 2 2 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 5 1 41