Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1029 ATGGTCTATGTATCTACAGAAGTTGACCACTCTGTGTGTGAGAGGGAGAATAGAATTGGTTCTTTGAAGAAGAAAGCAAATAATGCCTCCAGCAAGTTCAGACATTCATTGACAAAAAGGGGTAGGAGAAGTGGTAAAGTTATGTCTGTTGACATCGAGGATGTGCATGATGCTGAGGAGTTGCAGGCTGTCGATGCACTCCGTCAAGCACTTATATCGGAAGACCGTTTACCCTCAAGACATGATGATTATCATATGCTGCTCAGATTTTTGAAGGCGAGGAAATTTGATCTTGAGAAAACAAAACAAATGTGGATTGATATGCTTCAATGGAGGAAGGACTTCGGTGCTGACACAATTATGGAGGACTTCGAATTCAAGGAGCTCAACGAAGTCATTGAACATTATCCTCAAGGTCATCACGGAGTCGACAAGGAAGGCCGACCTGTTTATATTGAGAGATTAGGGAAAGTGGATGCTAACAAGCTGATGCAAGCCACAACAATGGACCGCTATGTAAAATACCATGTACAGGAGTTTGAGAGGACTTTTGTAATCAAGTTTCCATCTTGTTCGATTTCAGCGAGGAAGCAAATTGATCAAAGTACAACCATCCTAGATGTCCAAGGAGTGGGACTTAAGCATTTCACCAAATCTGCAAGGGAGCTTATCGTAAACCTTCAAAAGGTTGATGGTGACAATTACCCTGAGACACTGAATCGCATGTTTATCATCAATGCGGGTTCTGGATTTAGGCTATTGTGGAACACTGTTAAATCTTTTCTTGATCCCAAAACCACATCAAAGATCCATGTTCTTGGTAATAAGTTCCAGAGCAAGCTGCTTGAAATTATTGAAGCTAGTGAGCTGCCAGAATTTTTAGGAGGTACGTGCACTTGTGCTGATCAAGGAGGCTGTATGCGTTCTGATAAGGGCCCATGGAAGGACCCAGAGATTTTGAGGATGGTTCAAAATGGTTATGCCATATGTAGAACGAAATGTGAGAGTCAATCCACTGCTGAAAAGACCATCTCTGAGGATGAGATTGTTTACCCCAAGGTTTCTCGAGAGGTAGAAGACATTCAATCACTCTCCCCTGAAGTTCCTAGGAGCTACATCGAGCATCCGAATCTCTCTCCTGTACACGAAGAAGTCAGGATTAATCAAAATTTCCATAAATCTTACAATTATGAAGATTTCATCCCAATTATTGATAAGAGCATGAACGCACCTTGGCAGAATGTCATGGAGAATGACAGATATGCTCTCTCCAAAGCAGCGGATTGTTTCACCATACATGATGCTTACAAGGCTCCTGACGGTTTTAGCACTCAGATCTTCACTGGTGTCATGGCCTTGGTTATGGGCATTGTGACCATGATCAGACTGACACGAACAATGCCCAAGAAGTTCACTGATGCCAACCTCTATCCAGGTCCAATCTACTGTGTTGATGCAATGATTAAAAGCCACCCATATGCACACCAGCTATCTGCCCCTGTCATTACCGGCACAGAGTTCTTGGCCTTCATGAAACGCATGGCTGAGATGGAAGATAGAGTGAGTGTTCTCAGTGTCAAACCTACGGCCATGCCAGCTGACAAGGAGGATTTGCTGAATGCTGCTCTTATCCGGATCGACACCTTGGAGCGAGAACTTGCAGCAACCAAGAAGACTCTGGAGGAAGCCATGGCCCAACAGGAGGAGGTCCTGGCCTATATTGAGAAGAAGAAGAAGAAGAAGAAATTGGTATTCTATTAA 1761 43.55 MVYVSTEVDHSVCERENRIGSLKKKANNASSKFRHSLTKRGRRSGKVMSVDIEDVHDAEELQAVDALRQALISEDRLPSRHDDYHMLLRFLKARKFDLEKTKQMWIDMLQWRKDFGADTIMEDFEFKELNEVIEHYPQGHHGVDKEGRPVYIERLGKVDANKLMQATTMDRYVKYHVQEFERTFVIKFPSCSISARKQIDQSTTILDVQGVGLKHFTKSARELIVNLQKVDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHVLGNKFQSKLLEIIEASELPEFLGGTCTCADQGGCMRSDKGPWKDPEILRMVQNGYAICRTKCESQSTAEKTISEDEIVYPKVSREVEDIQSLSPEVPRSYIEHPNLSPVHEEVRINQNFHKSYNYEDFIPIIDKSMNAPWQNVMENDRYALSKAADCFTIHDAYKAPDGFSTQIFTGVMALVMGIVTMIRLTRTMPKKFTDANLYPGPIYCVDAMIKSHPYAHQLSAPVITGTEFLAFMKRMAEMEDRVSVLSVKPTAMPADKEDLLNAALIRIDTLERELAATKKTLEEAMAQQEEVLAYIEKKKKKKKLVFY* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18957443 18961992 + Vvi4g1029 Vvi4g1029 785808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1029 586 Pfam CRAL/TRIO domain 134 296 IPR001251 -
Vvi4g1029 586 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 13 584 - -
Vvi4g1029 586 SUPERFAMILY CRAL/TRIO N-terminal domain 57 124 IPR036273 -
Vvi4g1029 586 SMART sec14_4 128 299 IPR001251 -
Vvi4g1029 586 PRINTS Cellular retinaldehyde-binding protein signature 86 108 - -
Vvi4g1029 586 PRINTS Cellular retinaldehyde-binding protein signature 255 274 - -
Vvi4g1029 586 PRINTS Cellular retinaldehyde-binding protein signature 288 297 - -
Vvi4g1029 586 Gene3D - 45 115 - -
Vvi4g1029 586 Gene3D - 116 327 IPR036865 -
Vvi4g1029 586 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH12-LIKE 13 584 - -
Vvi4g1029 586 SUPERFAMILY CRAL/TRIO domain 128 323 IPR036865 -
Vvi4g1029 586 CDD SEC14 129 297 IPR001251 -
Vvi4g1029 586 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 128 302 IPR001251 -
Vvi4g1029 586 Pfam CRAL/TRIO, N-terminal domain 80 107 IPR011074 -
Vvi4g1029 586 Coils Coil 539 577 - -
Vvi4g1029 586 SMART CRAL_TRIO_N_2 83 108 IPR011074 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1029 - - - vvi:100250656 1135.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1029 Vvi18g988 ECH
Vvi3g351 Vvi4g1029 ECH
Vvi3g350 Vvi4g1029 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40