Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1031 ATGGATACGGATCTGCATCATATTATCAAGTCCCCGCAGCCACTTGTGAATGAACACTGCAAATATTTCATCTTTCAGTTGCTTCGAGGGTTGAAGTATCTCCACTCGGCAAATATCCTTCACCGTGACTTGAAGCCTGGGAACCTCCTTGTGAATGCAAATTGTGACCTGAAGATTTGTGATTTTGGGCTGGCAAGAACCAGCAAAGACAATGGCCAATTCATGACTGAGTATGTTGTCACCCGCTGGTACCGTGCACCAGAGCTTCTCCTCTGCTGTGACAATTATGGAACCTCTATTGATGTGTGGTCTGTAGGATGCATATTTGCAGAGATTCTTGGCCGGGAACCAATATTCCCTGGAACTGAAGGGGTTCACTTTTCTCATCTTTACCCCAGGGCTGACCCTTTAGCTATTGATTTGTTGCGGAGAATGCTTGTGTTCGATCCAACCAAGAGAATTACAGTTACAGAGGCACTTCAACATCCATATCTATCAAATCTGTATGATCCAAGCTGCAACCCTTCTGCCCAGGTCTCAATCAATCTTGACATAGATGAAAACTTGCAGGTGCGGATGATTAGGGAGATGATGTGGAGAGAAATGCTTCATTACCATCCTGAAGCTGTTTCCTGCATATTATGGGTTCTTCTAGTGGAGCTTCTTCAGAGTCCAGCCAACTTCAACACTCAGGTTCCGAAGAGGATCTCCGGCAAATTATGGATCAAAGGAAGCGGAAAAGAATGCTTTCGAATCGCGAATCAGCGAGGCGATCGCGGATGCCTTGGAACCTCCGAAAACCCTAGAAAATGGCGGTTCACTTGGGAAGCTCAATCTCACATCCCAACCCTCCGATTGTTTCTCTTCGATCAGGGCACCAAACCCTGCATTCAATGCAAAAATCTGAAAGTCGATTTGAATTTCGAACGGTCATTACTTTTAGTGAGCTGGTTCGAAGAAGAAACAGAAATCTCATTTAGGGTGCCGGTTCCAAGGGTTTTGGTTGACATTGAATCACCGATTAGTTTTAGAGCCATGGAGGATCACATTGAGGTTAAGCTCGTCCTGCTTCTTCCTGTCGATCACCACATTGTTTCGAACTTTAATTCCATATTGAATATGTCGGAAGCTACCTCGCAGCTGTTTTCTATGGATTCTGATATAAAGAGTCTATCTTCCAGAGGAGGAGTGCACTTCTACTGCAAAAGTTGCTCAACTAATTTAACTAAAAAGCCTCTCAGTTCTTTTGCTGAGATGCCATCAATCAATTGGCGAGAGGTTGCTGACAACTGGTTTGGTGCTTGTTGCTGTTCATTTGGAGGCATAAGTGAGAAGCTGGTAGCTAGATATGCAAATTCCTATTCATGTGGAGAGGAATCATGCCTATTAGACGCTACATCTGTTATTCTTTGCAAGGATGACCTTGTGGGATTTGAGTTTCCAGACAGGGATGGTGACCAAAACTATGAATCTGAACCTGATTGCACTGAAGATGACTGTATAAATGAAGATATGCAAGATGCTGGAGGCAATCATGGAAGATGTGTGTGCCCAACAGTTAAAAAAGAGAAAATGTCTGATCTCAGTGGAAAATTAAACTCCTTGCATATTCAGAAGGAACCCTTTGAACAGAAGGTTACAAAAGCTAGTGAAGTCCTGGCAAATAAGAAGTCTTTCCTTAATGGCTTTCTTGGAAACATTTTCATGGCTAGATCCTACAATCTTTCAAAAGATGTTGAGTGGATTAAATTTGCATGCCCCCAGTGTTCATCTCTTCTGGGAGCATACCCTTGTGCTGATGGTTATGCACCCTTAGATGGTGGAGTTCGATTGTTTAAATGTTACATCTCCACTTGCTTGCCAGTCTGTGAATCAGGTGACCTTTTTAGGAAGTATACCCTGGAAAGAATGTTCACAAGTCAGCTGTTGGAAAGTGCAAAGGATGAATTATCATTTAGGACTGTGGTTAGAGATTTGAGAACCAAATCTCCAGTGCTTCAAATTGTTCTTTTAAATCCAAATTCCTGGTGCTGTACTGGCTATTGTTTGGGAACAGAGGACACAGTGGATCCAGTTGCAAACATAAATCTGTACCCCGCCATCAAAGTTCTTTTTTCGGACTGCAGTTACAGAACTGAATCTCAAATAAGGATGATAGAAGAATGGGTAACAAAAAATCAAGCTGATGAAGTCTACATGTTGGACCATCTAATAAGTGAATTAATTGTATCCTTGGAGGCAGCAATGGATATGTATCCACCTTCATACACCTTCCTACAAGGTTTGCCTTTATCATCCTTGCCGAGGTAA 2310 42.64 MDTDLHHIIKSPQPLVNEHCKYFIFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSKDNGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGREPIFPGTEGVHFSHLYPRADPLAIDLLRRMLVFDPTKRITVTEALQHPYLSNLYDPSCNPSAQVSINLDIDENLQVRMIREMMWREMLHYHPEAVSCILWVLLVELLQSPANFNTQVPKRISGKLWIKGSGKECFRIANQRGDRGCLGTSENPRKWRFTWEAQSHIPTLRLFLFDQGTKPCIQCKNLKVDLNFERSLLLVSWFEEETEISFRVPVPRVLVDIESPISFRAMEDHIEVKLVLLLPVDHHIVSNFNSILNMSEATSQLFSMDSDIKSLSSRGGVHFYCKSCSTNLTKKPLSSFAEMPSINWREVADNWFGACCCSFGGISEKLVARYANSYSCGEESCLLDATSVILCKDDLVGFEFPDRDGDQNYESEPDCTEDDCINEDMQDAGGNHGRCVCPTVKKEKMSDLSGKLNSLHIQKEPFEQKVTKASEVLANKKSFLNGFLGNIFMARSYNLSKDVEWIKFACPQCSSLLGAYPCADGYAPLDGGVRLFKCYISTCLPVCESGDLFRKYTLERMFTSQLLESAKDELSFRTVVRDLRTKSPVLQIVLLNPNSWCCTGYCLGTEDTVDPVANINLYPAIKVLFSDCSYRTESQIRMIEEWVTKNQADEVYMLDHLISELIVSLEAAMDMYPPSYTFLQGLPLSSLPR* 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18974000 19005635 + Vvi4g1031 Vvi4g1031 785810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1031 769 Pfam Protein kinase domain 3 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1031 769 SMART serkin_6 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1031 769 Gene3D Transferase(Phosphotransferase) domain 1 125 178 - -
Vvi4g1031 769 ProSiteProfiles Protein kinase domain profile. 1 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1031 769 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Vvi4g1031 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 39 51 IPR008271 GO:0004672|GO:0006468
Vvi4g1031 769 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 261 767 IPR019193 -
Vvi4g1031 769 Gene3D Phosphorylase Kinase; domain 1 179 203 - -
Vvi4g1031 769 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 353 759 IPR019193 -
Vvi4g1031 769 SUPERFAMILY Protein kinase-like (PK-like) 1 172 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1031 Vvi18g995 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76587 PF09814 HECT_2 8.20E-24 CL0552 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1031 - - zju:107424576 637.876