Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1032 ATGGGTACCGTCTCTCGCTCCGCTCTCCTGTTTCTCATTCCCACACTACTATTCTCTGCGGCCGTCTCCGACATATCTTCCGATGAATCCGATGACCTATTGATCCGCCAAGTTGTGCCGGAGGGGGACGATCTATTGAGCGCTGAACACCAGTTTGGCTTATTCAAGGCTAAGTTCGGCAAAACCTACTCCACTGTCGAGGAGCACGACTACCGCTTCAGCGTCTTCGAGGCTAACTTGCGTCGCGCTAGAAGGCACCAGTTGCTCGATCCTTCTGCTGTACACGGCGTCACTCGGTTCTCCGATTTAACTCCTGACGAGTTTCGCCGGGATTATCTCGGATTAAAGCCGCTCCGGCTCCCAGCCGATGCACAAAAGGCTCCGATCCTCCCGACCAACGATCTTCCTACCGATTTTGACTGGAGAGATCATGGTGCCGTAACCCCAGTTAAAGATCAAGGTTCCTGTGGATCATGCTGGTCCTTCAGTGCAATTGGAGCCTTGGAAGGAGCTCATTTTCTTACGACTGGAAATCTTATTAGCATGAGTGAGCAACAGCTTGTGGATTGTGACCATGAGTGTGATCCAGAAGAATATGGTGCTTGTGACCAAGGGTGCAATGGGGGGTTGATGACAAGTGCTTTTGAGTACATACTAAAAGCTGGGGGAGTTGAGCGAGAAGAGACTTATCCTTATATTGGATCTGATCGTGGTTCTTGCAAATTTAACAAAAGCCAAATTGTTGCATCAGTATCGAACTTCAGTGTTGTTTCACTTGATGAAGATCAAATTGCTGCAAATATGGTGAAGAATGGCCCTCTTGCAGTGGGTATCAACGCAGTTTTCATGCAAACATACATGAAGGGAGTTTCATGCCCATACATTTGCTCAAGAAATTTGGATCATGGAGTGGTTCTAGTTGGATATGGTTCTGCTGGTTATGCCCCTATCCGGTTCAAGGAAAAGCCTTACTGGATCATAAAGAACTCTTGGGGAGAAAGCTGGGGAGAAGATGGGTATTACAAGATCTGCAGAGGTCATAACGCATGTGGAGTGGATTCCATGGTCTCAACTGTAGCAGCTATCCAGACCACCACCCAATAG 1104 48.1 MGTVSRSALLFLIPTLLFSAAVSDISSDESDDLLIRQVVPEGDDLLSAEHQFGLFKAKFGKTYSTVEEHDYRFSVFEANLRRARRHQLLDPSAVHGVTRFSDLTPDEFRRDYLGLKPLRLPADAQKAPILPTNDLPTDFDWRDHGAVTPVKDQGSCGSCWSFSAIGALEGAHFLTTGNLISMSEQQLVDCDHECDPEEYGACDQGCNGGLMTSAFEYILKAGGVEREETYPYIGSDRGSCKFNKSQIVASVSNFSVVSLDEDQIAANMVKNGPLAVGINAVFMQTYMKGVSCPYICSRNLDHGVVLVGYGSAGYAPIRFKEKPYWIIKNSWGESWGEDGYYKICRGHNACGVDSMVSTVAAIQTTTQ* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19007045 19009917 - Vvi4g1032 Vvi4g1032 785811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1032 367 SMART pept_c1 135 360 IPR000668 GO:0006508|GO:0008234
Vvi4g1032 367 CDD Peptidase_C1A 136 359 IPR039417 -
Vvi4g1032 367 Gene3D Cysteine proteinases 29 360 - -
Vvi4g1032 367 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vvi4g1032 367 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508|GO:0008234
Vvi4g1032 367 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Vvi4g1032 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 361 - -
Vvi4g1032 367 PANTHER CYSTEINE PROTEASE RD19C-RELATED 25 361 - -
Vvi4g1032 367 SUPERFAMILY Cysteine proteinases 49 360 IPR038765 -
Vvi4g1032 367 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Vvi4g1032 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Vvi4g1032 367 SMART Inhibitor_I29_2 52 108 IPR013201 -
Vvi4g1032 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Vvi4g1032 367 Pfam Papain family cysteine protease 135 358 IPR000668 GO:0006508|GO:0008234
Vvi4g1032 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1032 K01373 CTSF; cathepsin F [EC:3.4.22.41] - vvi:100233020 743.036
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1032 . . . . Bpe15g00323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g00819 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102