Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1033 ATGATAGCGGCTATTTCATGGATCCCAAAAGGGGTGTCAAAGTCTGTTCCTTCGGTGGTTGAGCCACCTTCAAAGGAGGAAATTGAAGAGATGCTCAAGAACGGTGCTTTGGAGAGATGTGGAGATAGTGAAAGCGAGGAAGATGATGAAATTATGGATGCTGATGCTGCCAAGCAGGATGATACAGTTGCCCATGCATTAGCTGCTGCAGATGCCCTGGGCAAGACTCCAAAGAACTCAGGAACAAGTTTCCTGGACATAACTGATGGTCTGAAGGAACTTGACATGGATCATTATGATGATGAGGATGATGGCATTGAGGTATTTAGCAAGGGGCTTGGGGACACCTACTACCCAAGTAATGACATGGATCCATACCTGAAGGATAACAATGATGATGACTCTGAAGAGGTTGAGGATATGACTATAAAAGCAGAGGATTCAGTCATTGTTTGTGCACGTAATGCGGATGATCTCAGTCATCTTGAGGTTTGGATATTTGAGGAATCAGAGGATGGTGATTCAAACATGTATGTACATCATGATGTCATAATCCCAGCATTTCCCCTTTGCACAGCATGGCTTGATTGCCCACTTAAAGGTGGAGAAAAAGGGAACTTTATAGCTGTAGGCTCAATGGAAACTTCCATTGAGATATGGGACCTTGACATTATTGATGAAGTCCAACCATTTTTGGTATTAGGTGGTGTTGCTGAGAAGAAGAAGAAGAAAGCAAAGAAGACATCGGTCAAATACAGAAAAGGCAGTCACACCGATTCAGTGCTTGGTCTTGCTTGGAACAAGGAATACAGGAATATACTTGCTAGTGCAAGTGCTGATAAACTAGTCAAGATTTGGGATGTCACTTCAGGAGAATGCAATATCACCATGGATCACCATACGGACAAGGCAATAGTTGCCTGGAATCATCATGAGCCCCAAGTTCTTCTAAGTGGATCGTTTGATCGTTCAGTAGTTATGAAGGATGGGAGGATACCAACGCATGCTGGTTTTAAGTGGTCAGTCACAGCTGATGTTGAAAGCTTGGCATGGGATCCACACACTAATCACTCTTTTGTGGTCAGTTTGGAGGATGGTACAGTTCAAGGTTTTGATGTTCGTACTGCTAAGTCAGATTCGGCTTCTGAGTCAAAGCCAGCTTTCACTCTCCATGCACATGACCAAGCTGTTTGCACAATCTCCTACAATCCCTTGGCACCTAATTTTCTTGCAACCGGATCCACAGATAAAATGGTAAAACTTTGGGATTTGTCAAATAACCAACCTTCCTGTGTTGCAACCAGGAATCCTAAAGCTGGAGCTGTCTTTTCCATTTCCTTCTCAGAGGACAGACCCTTTTTGCTGGCTATAGGGGGTTCTACGGGAAAATTGGAGGTATGGGATACACTATCTGAAGCTCCAGTCTCAAGAAAATTTGGCAACTACAGTAGTCAGAGCATATCTAAACCCGAGGCTTGA 1479 43.75 MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALERCGDSESEEDDEIMDADAAKQDDTVAHALAAADALGKTPKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDTYYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSNMYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGGVAEKKKKKAKKTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGECNITMDHHTDKAIVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKPAFTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAPVSRKFGNYSSQSISKPEA* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19011765 19024677 - Vvi4g1033 Vvi4g1033 785812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1033 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 296 IPR001680 GO:0005515
Vvi4g1033 492 Gene3D - 96 329 IPR015943 GO:0005515
Vvi4g1033 492 SUPERFAMILY WD40 repeat-like 204 475 IPR036322 GO:0005515
Vvi4g1033 492 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 481 - -
Vvi4g1033 492 SMART WD40_4 247 287 IPR001680 GO:0005515
Vvi4g1033 492 SMART WD40_4 383 423 IPR001680 GO:0005515
Vvi4g1033 492 SMART WD40_4 428 468 IPR001680 GO:0005515
Vvi4g1033 492 SMART WD40_4 290 329 IPR001680 GO:0005515
Vvi4g1033 492 SMART WD40_4 333 372 IPR001680 GO:0005515
Vvi4g1033 492 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 481 IPR044285 GO:0006364
Vvi4g1033 492 ProSitePatterns Trp-Asp (WD) repeats signature. 410 424 IPR019775 -
Vvi4g1033 492 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Vvi4g1033 492 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Vvi4g1033 492 PRINTS G protein beta WD-40 repeat signature 410 424 IPR020472 -
Vvi4g1033 492 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 292 - -
Vvi4g1033 492 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 432 IPR001680 GO:0005515
Vvi4g1033 492 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Vvi4g1033 492 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 428 - -
Vvi4g1033 492 Pfam WD domain, G-beta repeat 256 287 IPR001680 GO:0005515
Vvi4g1033 492 Pfam WD domain, G-beta repeat 387 423 IPR001680 GO:0005515
Vvi4g1033 492 Gene3D - 331 487 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1033 K14791 PWP1; periodic tryptophan protein 1 - vvi:100257466 922.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008891 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 34