Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g104 ATGACTCCAGTTTTTCTGAACACTTCATCATCTTCTCCTTTTCCTGCTCTGGAGCTTAAAGAAGATCATCAACACTTCCAGCTCCTTTTTAGTACAAACCCACCATCATACCAAGCTTCTTCCTCTCACCCATGTCCTAGTTTCTTCAACTCAAGTACTCAATCTCAGAGAGGAGATCATAGCCCTAGAGACCCCCAACAGCATGAAGATAAGGATGATAAGTACATTTCCCATGGAGGATGTGGTGAAAGCCAAGTATTCTCATCTTCTTCACTCCTGCAGCCCATGGCGGATGACAATAAGAGCAGCCACAAATTGTCGGTTTTTAAGAAGGAAGAAGGAGATGAAGGTAATAAAAGTACTGAGAAATGGATGTCTTCAAAGATGAGGCTGATGAGAAAAATGATGAACTCGGATTGCACTACAGCGAAAATCGAGCAGAAGGTTGAAGATCATCAGCAGTGGGACAATATTAATGAGTTCAACTCTTCCAACAATACTAGTAATATCCCAATTAGAGTCTGCAGTGATTGTAACACAACCAAAACCCCTCTTTGGAGGAGCGGTCCTAGAGGTCCCAAGTCACTTTGCAATGCCTGTGGAATTAGGCAAAGGAAGGCGAGACGAGCCATGGCAGCAGCGGCAGCAGCAGCAGCGAATGGCACAGCCGTTGGGACCGAGATATCGCCTATGAAGATGAAGCTGCCCAACAAGGAAAAGAAGATGCATACAAGCAATGTAGGGCAACAGAAGAAGCTCTGCAAGCCCCCTTGTCCTCCTCCCACCGAGAAGAAGCTTTGCTTCGAAGATTTCACTTCGAGTATTTGCAAGAACTCAGGTTTTAGACGAGTGTTCCCTCGGGATGAAGAAGAAGCCGCGATCCTCCTAATGGCCTTATCTTGTGACCTTGTTTACAGTTGA 921 45.49 MTPVFLNTSSSSPFPALELKEDHQHFQLLFSTNPPSYQASSSHPCPSFFNSSTQSQRGDHSPRDPQQHEDKDDKYISHGGCGESQVFSSSSLLQPMADDNKSSHKLSVFKKEEGDEGNKSTEKWMSSKMRLMRKMMNSDCTTAKIEQKVEDHQQWDNINEFNSSNNTSNIPIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAAANGTAVGTEISPMKMKLPNKEKKMHTSNVGQQKKLCKPPCPPPTEKKLCFEDFTSSICKNSGFRRVFPRDEEEAAILLMALSCDLVYS* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1062804 1064236 + Vvi4g104 Vvi4g104 784883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g104 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 305 - -
Vvi4g104 306 MobiDBLite consensus disorder prediction 30 80 - -
Vvi4g104 306 SMART GATA_3 169 220 IPR000679 GO:0006355|GO:0043565
Vvi4g104 306 MobiDBLite consensus disorder prediction 30 60 - -
Vvi4g104 306 MobiDBLite consensus disorder prediction 61 78 - -
Vvi4g104 306 ProSiteProfiles GATA-type zinc finger domain profile. 173 205 IPR000679 GO:0006355|GO:0043565
Vvi4g104 306 MobiDBLite consensus disorder prediction 103 122 - -
Vvi4g104 306 MobiDBLite consensus disorder prediction 94 122 - -
Vvi4g104 306 Pfam GATA zinc finger 175 208 IPR000679 GO:0006355|GO:0043565
Vvi4g104 306 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355|GO:0043565
Vvi4g104 306 CDD ZnF_GATA 174 206 IPR000679 GO:0006355|GO:0043565
Vvi4g104 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 209 - -
Vvi4g104 306 Gene3D - 167 253 IPR013088 GO:0006355|GO:0008270
Vvi4g104 306 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g104 - - - vvi:100247474 584.334
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g104 . Blo12g01014 . . . Bpe02g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00259 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001864 2 2 2 1 4 2 3 2 2 2 2 2 1 2 2 2 2 5 3 2 2 2 2 2 2 2 2 4 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14697 PF00320 GATA 5.00E-17 CL0167 Vvi TF