Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1044 ATGCTGGGCTGCACGCATCAAAGATCACTCATGACCTCTGTTTTGTTGCCCAAGACTCCGTTGAGGCACTCCGACGTCGATTTTCACGACGTCTTCGGTGGTTCGCCGCGGCGGTTGTCGAATCAGGTTACGCGATGCAGCTTCGGGGATGGTTCAGAACCATCCACGTTGAGAGGAAGTGAGGATGGGGTTTCAATCTGCAATCCGTGGACTGGTTTTGGTGAGAAACTTGTGTTTGGCGAAGACGGTGGTAATGGGCGGCGTTACCACAGTGAGAACTTCTTTGACGATATCTTTAGAGGTGACCACTCTGTGAATACCAGTCCAAGTGGGTACGATCTGGATCCGATTGTTGTTGTGCCCTTGGAGATGATCAAGTTGGTGATGCCTCAAAACCGTCCTGATGTCCACGATGATACGCTCCCCTCCCAGCTTTCCTATCTCAATCACCTAGTGCGAAGGGTAGAGTTCCATCGCCAATCTCAAAGCGCGGCCGACCTGATTTTTCAGCAGGGACATGCTTGTGAGTTTGAAGAGATGTTGAGTTTGGGGAACTGTTTGGATGGGCATTCTTTGTACTGTTTGCTCATAACTACAGTCACAGCTGTGATTTTGCAGGCACCTGGGGCTTCTTCCATTGTCGCACCGAGTTCCAATTGCTATGCTCTTGATAATTCCAGCCACATTTTTGATTTTAGTAGCTGGCTTGGGCAGCCTTTTGAGTATGATGGGAAGGATTCTGACTTGGTGGTTCGGTTTTGTAAAGATGTGGAGAGTAGATCGCAAACGGGATATGTGGATTTTGGCCGATTTGATAAGTTCAACTATTTTGTTGCTGGTTCAGGACACATTAATTTTGTTCAAGAATTTTATAATGGTGACCTCTTGAATTGTGAGACAACTCATGACAAAATGGGACGCACAGCTCAGGTAAATATTATATGTGGAAGTTGTTCAAATGGACAATGTGCAGGTGAACTTGGATGCATATGCAATGTTACTTATGAGTCAACTTGCAGAGTTCTTGTTGAACTTGCCATTCCATGCAAGGAACAGGGTGTGCGTGTATTTGAGGGCTTCACTGTTGGTTTTCATCCGCGGTCATGGGAAATTGTTTACAATGGCATGACTCAATTGGGTTTTGATAAGTCTCACCATGCCTTCAGCTTTGGCACTGAACACACTTATGTTGCTCTTTACATGACTGCAATTGCGTCCCTTTCCACTTTGGTGCAAAAACCTACTGTTAAGATTTTCCCGGAACATGGCCTGAAGGTAGGATTATCAGGCTCAGGGGCAACTGGAAGACCACCTACAACGTTGTCACCCACAATGTTGGTTGTGGATTGGAGATGTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTGAATATCCTCAAGGAAAAGGAGGAGGAACTACAAGGGGATGGGCTATATTTGGGGTGGCATCTTGCATATTCATTATTCTATCAACGTTGTTTTGCTGTGGCGGGTTTGTTTACAAGACTCGAGTGGAGCGCCAGCGTGGGCTTGATGCATTGCCAGGCATGACAATTTTATCTGCCTGTTTAGAAGCTGTAAGCGGAGGATCGCACTACTCACGAGCAGAAGATACCAACAGTGCATTTATCAATCAAGCCTCTTGGGAACGCCAGCCTGATGCTGCTCAAGGAACATGGAAAACAAGTGAAAGAAAGTATGGTTCAATTTAA 1770 45.88 MLGCTHQRSLMTSVLLPKTPLRHSDVDFHDVFGGSPRRLSNQVTRCSFGDGSEPSTLRGSEDGVSICNPWTGFGEKLVFGEDGGNGRRYHSENFFDDIFRGDHSVNTSPSGYDLDPIVVVPLEMIKLVMPQNRPDVHDDTLPSQLSYLNHLVRRVEFHRQSQSAADLIFQQGHACEFEEMLSLGNCLDGHSLYCLLITTVTAVILQAPGASSIVAPSSNCYALDNSSHIFDFSSWLGQPFEYDGKDSDLVVRFCKDVESRSQTGYVDFGRFDKFNYFVAGSGHINFVQEFYNGDLLNCETTHDKMGRTAQVNIICGSCSNGQCAGELGCICNVTYESTCRVLVELAIPCKEQGVRVFEGFTVGFHPRSWEIVYNGMTQLGFDKSHHAFSFGTEHTYVALYMTAIASLSTLVQKPTVKIFPEHGLKVGLSGSGATGRPPTTLSPTMLVVDWRCEKARDTPYEVDITIPVEGYEPIQFTLTKMCEYPQGKGGGTTRGWAIFGVASCIFIILSTLFCCGGFVYKTRVERQRGLDALPGMTILSACLEAVSGGSHYSRAEDTNSAFINQASWERQPDAAQGTWKTSERKYGSI* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19116411 19130669 + Vvi4g1044 Vvi4g1044 785823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1044 589 PANTHER G-PROTEIN COUPLED RECEPTOR 186 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1044 - - - vvi:100266005 854.358
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60