Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1050 ATGACCAGCTCCTCCGCCACCTCTCGCAAGGCACTTAGCAAAATCGCTTGCAATCGGCTCCAGAAAGAGCTTGTTGAGTGGCAGGTCAATCCACCCGCCGGTTTCAAACACAAAGTCACCGACAATCTTCAAAGGTGGGTCATAGAAGTGCATGGAGCTCCAGGAACTCTCTACGCTAACGAATCTTACCAGCTTCAGGTTGATTTTCCTGAGCATTACCCCATGGAAGCTCCACAGGTTATTTTTCTGCAGCCGGCTCCTCTGCACCCTCATATTTATAGCAATGGTCATATTTGTCTAGATATTTTGTATGATTCTTGGTCCCCAGCCATGACAGTTAGTTCTATCTGCATCAGCATTCTCTCCATGCTATCAAGCTCAACTGTGAAGCAACGTCCTGAAGATAATGACCGTTATGTGAGGAACTGCAGGAATGGCAGATCCCCCAAGGAGACCAGGTGGTGGTTCCATGACGATAAAGTCTAA 486 47.74 MTSSSATSRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVHGAPGTLYANESYQLQVDFPEHYPMEAPQVIFLQPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVRNCRNGRSPKETRWWFHDDKV* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19153004 19160933 - Vvi4g1050 Vvi4g1050 785829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1050 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Vvi4g1050 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 16-RELATED 11 161 - -
Vvi4g1050 161 SMART ubc_7 18 161 - -
Vvi4g1050 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Vvi4g1050 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 11 161 - -
Vvi4g1050 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Vvi4g1050 161 CDD UBCc 17 117 IPR000608 -
Vvi4g1050 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Vvi4g1050 161 SUPERFAMILY UBC-like 6 126 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1050 K10688 UBE2W, UBC16; ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25] - vvi:100260813 328.946
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1050 Vvi18g1009 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1050 . Blo16g00061 . Bda10g00150 . Bpe13g00430 . Bma15g00984 . Cmo16g00693 . . . . . . . . . . . . . . . . . . . . . Cone8ag0829 Cone12ag0782 . . . . Chy07g01261 . . Blo06g00146 Bda11g01849 . Bpe10g00132 . . Bma06g00109 . . . Cma16g00635 . . . . . . . . . . . . Cla07g00833 Cam07g0903 Cec07g0955 Cco07g0945 Clacu07g0876 Cmu07g0877 Cre07g1239 Lsi07g00235 Csa04g00542 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003259 4 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 4 1 1 1 1 4 1 2 49