Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1052 ATGTATGTTGGACAAATTGGACGTACATCCATGCCCCAAATTGCTTATTTTTCATTCCATAGTACTTTTTTTTCAATGAAGGAAACATCTATTAACTACTTATCGGACGTAAGATGTATCACAAGGGGTCCAAATGCAAAACGCAGCGTTTTGTGGAAACAGAGTAATCGAAGAATCCCTTGGCTCGCCCTATCCAACGCAGTACGCACACTCATGGCGTCTCCTCTCTCATCGCTCTCGTCCATCCTCTCCCAACCTCACTGCGCCATCCGCATCAGACTTCCTACGCGATGTTGCTTCGGTCTTCAATCTCTCTCCCCAAAACCCCACCTTTCTTCTTCTCGCTGCAATCTTCGTACTCCTCCCCCTTTCAGGCCCGGTTTCTCTCTCACTTTCTCGAGAAAATTCTCTCAATCCCATTCTCACCTTCCACTCTCCAACAAGTCGGAGGTTCCCAGCCTCCACTCCTTCATTGCTCAAGCCGCTGTCGCCACTTCCGAAGTGCAGCCCGACCCTGTGTCAGCTTCCGAAATTCTTCCAAGAGGTCGTATTTATCATGAGACATATGGTTGTCAAATGAATATTAATGATATGGAGATTGTCCTCTCTATCATGAAGAAAGCTGGATATAATGAAGTTGTGGAAGTTCCTGAGAGTGCTGAGGTCATTTTCATCAATACTTGTGCTATAAGAGACAATGCAGAACAAAAGGTGTGGCAGAGGCTTAACTATTTTTGGTTTCTTAAAAGGCATTGGAAGAGCAATGTCTCTATTGGAAGGGCGGATTCCCTGCACCCTCCAAAAGTAGTTGTATTAGGATGCATGGCTGAAAGGTTGAAGGATAAGATACTAGATGCGGATAAGATGGTTGATGTTGTCTGTGGGCCTGATGCTTACAGGGACTTGCCGCGGTTGTTAGAGGAAGTAGACTATGGTCAAAAAGGGATCAATACTCTTCTTTCACTTGAAGAAACTTATGCTGATATTAGCCCAGTTAGAATTTCCAAAAATTCAGTTACTGCTTTTGTCTCTATTATGAGGGGCTGCAACAATATGTGCTCGTTTTGCATTGTTCCTTTCACTAGAGGGAGGGAGCGATCACGGCCTGTGGAATCAATTGTCAGAGAGGTGGCTGAGCTTTGGAAAGAAGGAGTAAAAGAGGTCATGCTTCTTGGTCAAAATGTGAATAGCTATAATGATGCTTCTGGGTTTGACAAAGAAGTTGAACCAGGTGCTAATTGGAAACTTAGTGAAGAATTCCCTGAAATGCGGTTCAGGTACACATCCCCACATCCTAAAGATTTCCCAGATGAGTTACTATATTTAATGCGAGATAGATATAATGTCTGCAAAAGTATCCACTTGCCTGCACAAACTGGGAGTAGTACTGTACTTGAAAGAATGCGTCGGGGTTATACACGGGAAGCGTACTTGGATCTCGTACAAAAAATACGGAGAATCGTTCCTGATGTTGGGATTACCAGTGATTTCATATGTGGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGAGAAAACCCATGCACATAGAAACTATGTTGATGATGTTCCTGACAACATCAAGCAGAGGAGGCTGGCAGAGATGATAGAGGTCTTCCGTGAGAGTACAGGTCAGTGTTATGACTCCCAAATTGGTACTGTTCAGCTGGTGTTAGTTGAAGGCCCCAATAAGAGAGCTCCAGATACAGAGCTAATCGGCAAGACTGATAGAGGCCATAGAGTTTCATTTAAAAATACACCCGTCCCCCATTGGGATGATGATGTTGGAGGGAATCAAAATCCTAGAGTTGGCGATTTCGTGGAGGTTCGCATATTGACGTCAACACGAGCCTCACTTTTTGGGGAAGCACTTGCTATAACTAAATTAAGCTTTTGGCATTATATAATCTTCACCACAACCATTTAA 1992 43.72 MYVGQIGRTSMPQIAYFSFHSTFFSMKETSINYLSDVRCITRGPNAKRSVLWKQSNRRIPWLALSNAVRTLMASPLSSLSSILSQPHCAIRIRLPTRCCFGLQSLSPKPHLSSSRCNLRTPPPFRPGFSLTFSRKFSQSHSHLPLSNKSEVPSLHSFIAQAAVATSEVQPDPVSASEILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANWKLSEEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVCKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYADTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYDSQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVEVRILTSTRASLFGEALAITKLSFWHYIIFTTTI* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19181535 19187429 + Vvi4g1052 Vvi4g1052 785831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1052 663 ProSiteProfiles TRAM domain profile. 570 647 IPR002792 -
Vvi4g1052 663 Pfam TRAM domain 570 646 IPR002792 -
Vvi4g1052 663 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 182 311 IPR013848 GO:0035596|GO:0051539
Vvi4g1052 663 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 131 652 - -
Vvi4g1052 663 SFLD B12-binding domain containing 264 531 - -
Vvi4g1052 663 CDD Radical_SAM 343 560 - -
Vvi4g1052 663 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 183 647 IPR006463 GO:0006400|GO:0016740|GO:0051539
Vvi4g1052 663 Gene3D tm_1862 like domain 337 571 IPR023404 -
Vvi4g1052 663 SFLD CDK5RAP1 182 651 - -
Vvi4g1052 663 SMART MiaB 339 556 IPR006638 GO:0003824|GO:0051536
Vvi4g1052 663 SUPERFAMILY Radical SAM enzymes 333 563 - -
Vvi4g1052 663 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 183 641 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vvi4g1052 663 Gene3D - 183 324 IPR038135 -
Vvi4g1052 663 ProSiteProfiles Radical SAM core domain profile. 335 567 IPR007197 GO:0003824|GO:0051536
Vvi4g1052 663 Pfam Uncharacterized protein family UPF0004 183 295 IPR013848 GO:0035596|GO:0051539
Vvi4g1052 663 Pfam Radical SAM superfamily 343 516 IPR007197 GO:0003824|GO:0051536
Vvi4g1052 663 SFLD Radical SAM 182 651 IPR007197 GO:0003824|GO:0051536
Vvi4g1052 663 TIGRFAM miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 184 644 - -
Vvi4g1052 663 ProSitePatterns Methylthiotransferase radical SAM domain signature. 343 363 IPR020612 GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1052 - - - vvi:100266017 1156.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1052 . . . Bda10g00151 . . . Bma15g00978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00338 . . Bpe10g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011095 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30