Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1056 ATGCACGGCCCAAGTCATTTCCGGCGCAACCTCACGGGATTCCTTCTCCGGCGGCACCTTCTCCACACAAAACCCGGTCGCCGGTACGTTCCCAGAAACGACGACGTCCAGAAGAAAGACAATGGAGAAAAGCACATGTTTCTATACAAGAGTTGGGGTCAACACATCCTAACCAACCCAAGGGTTCTCGACACCATCGTTCGAAAATCAAATATAAAGCCCACAGATACCGTCCTTGAGATCGGACCCGGCACTGGAAATCTCACTCTAAGGCTTCTTCAAGCAGCACAAAGGGTCGTTGCAGTTGAGTTGGACGCTAGAATGGTGGAAATTCTCCGTAAACGTGTTGCTGAACATGGTCTTGAAGATCAGCTCACTGTTATATGTAAAGATGCATTGAAGACGGATTTTCCTCAGTTTGATCTTGTTGTGGCCAACATCCCGTATGGAATATCTTCGCCTCTGGTGGCTAAATTGGTATTCGGGGCGAACCCATTTCGAAGCGCCACGCTTCTCCTTCAAAAAGAGTTCGCACGGCGGCTGTTGGCTAACCCCGGCGACTCAGAGTTCAACCGTCTGGCTGTGAATGTGAAGTTGGTGGCTGAAGTTGAATTTGTTATGGATGTAAGCAAGAGGGACTTTCTTCCATGTCCAAAAGTTGACTCTTCCGTGGTTACAATACGTCCGAAAGCCGAAGTTCCGGATGTGGATTTGAATGAATGGTGTGCTTTCACGAGAACGTGTTTTAGTAAGAAGAATAAGACATTGGGTGCAACGTTTAAGCATAAGAGAAGGGTGATGGAGCTTTGGAGATTGTCCAATTTGAGGGGTTCAGAGACAGGAAATGCAATGAGTCTGTTCAAAGAGAAGATAAATGGGGTTCTGAAATTAGGTGGGTTTGATGATAAGAGGCCTGCAAAACTGTCTGGGAAGGAGCTGCTGCAACTGCTTTCCTTATTCAATCAAGCTGGAATCCATTTTCATGATCAAGCAAAGCCAAGGAATGCAGACAATATAGCTGCTTCGCCGGAAATCTCATATAGCATGGCGGAAAAGATTACCAGATGCGGTCCACTTCAATACAATATAGGTTCCAATGGGAACCTACTTCTAAATTCTTTTAAGGGCTATATTTGGAACTATTCTCAATAA 1152 45.83 MHGPSHFRRNLTGFLLRRHLLHTKPGRRYVPRNDDVQKKDNGEKHMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMVEILRKRVAEHGLEDQLTVICKDALKTDFPQFDLVVANIPYGISSPLVAKLVFGANPFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKHKRRVMELWRLSNLRGSETGNAMSLFKEKINGVLKLGGFDDKRPAKLSGKELLQLLSLFNQAGIHFHDQAKPRNADNIAASPEISYSMAEKITRCGPLQYNIGSNGNLLLNSFKGYIWNYSQ* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19221791 19223454 - Vvi4g1056 Vvi4g1056 785835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1056 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 322 IPR029063 -
Vvi4g1056 383 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 46 321 IPR011530 GO:0000179|GO:0006364
Vvi4g1056 383 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 48 324 IPR001737 -
Vvi4g1056 383 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, MITOCHONDRIAL 34 328 - -
Vvi4g1056 383 CDD AdoMet_MTases 77 160 - -
Vvi4g1056 383 TIGRFAM ksgA: ribosomal RNA small subunit methyltransferase A 49 318 IPR011530 GO:0000179|GO:0006364
Vvi4g1056 383 SMART rADcneu6 62 231 IPR020598 GO:0000154|GO:0000179|GO:0008649
Vvi4g1056 383 Pfam Ribosomal RNA adenine dimethylase 50 263 IPR001737 -
Vvi4g1056 383 Gene3D - 234 328 - -
Vvi4g1056 383 Gene3D Vaccinia Virus protein VP39 48 232 IPR029063 -
Vvi4g1056 383 PANTHER DIMETHYLADENOSINE TRANSFERASE 34 328 IPR001737 -
Vvi4g1056 383 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 78 105 IPR020596 GO:0000154|GO:0000179|GO:0008649
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1056 K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] - vvi:100247089 657.907
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1056 . . Bda04g00036 . . . Bma09g00094 . . . . Cma07g00458 . Car07g00404 Sed06g1238 Cpe19g00832 . Bhi03g00905 Tan03g2037 Cmetu02g1762 . Hepe04g1559 . . Cla01g01947 Cam01g2035 Cec04g1693 Cco04g1758 Clacu01g2057 Cmu01g1934 Cre04g1608 . . Cone6ag1654 . Lsi01g00637 . . Cme08g00893 Blo05g00813 . . . . Bpe06g00036 . . . . Cmo07g00455 . . . . . . . . . . . . . . . . . . . . . Csa06g03289 Chy02g00607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011898 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30