Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1059 ATGCAAATTGACCCAAGACGAGCTCGGTTTCCATGCTGCATTGTGTGGACCCCTCTTCCTGTCATATCATGGCTGATTCCTTTCGTTGGCCACATTGGCATATGCAGAGAGGATGGGGTAATCTTGGACTTTGCAGGGCCCAATTTTGTCTGTGTAGATAATTTTGCCTTTGGAGCAGTGACCCGTTATATCCAAATTAGCAAAGAAAAGTGCTGCATTTCTCCTCATCATCCTGCTCCATACAGAAGAGAGAATGGACGTGGACAGGATGAAACTGAGATAGACATATTGACATGGGATGATGCACTGCGGAAGAGCACACAGGAATTCCAACACCAATCTTACAACCTTTTTACTTGCAACTGCCACTCCTTTGTGGCAAACAATCTGAACAGATTGGGCTTTTATGATGGTGGTTGGAATGTGGTGAATCTTGCAGCTCTCATTTTCCTCAAAGGTCGCTGGGTGAGCACAACATCTATGATAAAATCTTTCTTACCATTTGCCATAGTGTCCGCTCTTGGACTGTTCTTTGGGGGCTTGACCTTCTTAACTTTCTTGGCTTTCTTCACCTTCCTTCTTGTTGGATGGTTCCTTCTCGGTACTTACTGTTTCAAGAATTTGATCCACTTGTAG 636 44.34 MQIDPRRARFPCCIVWTPLPVISWLIPFVGHIGICREDGVILDFAGPNFVCVDNFAFGAVTRYIQISKEKCCISPHHPAPYRRENGRGQDETEIDILTWDDALRKSTQEFQHQSYNLFTCNCHSFVANNLNRLGFYDGGWNVVNLAALIFLKGRWVSTTSMIKSFLPFAIVSALGLFFGGLTFLTFLAFFTFLLVGWFLLGTYCFKNLIHL* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19254179 19256752 - Vvi4g1059 Vvi4g1059 785838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1059 211 PANTHER - 1 211 - -
Vvi4g1059 211 PANTHER UNCHARACTERIZED 1 211 IPR008496 -
Vvi4g1059 211 Pfam Protein of unknown function (DUF778) 19 68 IPR008496 -
Vvi4g1059 211 Pfam Protein of unknown function (DUF778) 69 155 IPR008496 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1059 K20726 TMEM222; transmembrane protein 222 - vvi:100259075 423.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1059 . . . . . . . . . Cmo16g00696 . . . . . . . . . . . . . . . . . . . . . Cone8ag0831 . . . . . Chy07g01264 . . . . . . . . . . . . Cma16g00639 . . . . Cpe14g00545 . . . . . . . Cla07g00837 Cam07g0906 Cec07g0959 Cco07g0949 Clacu07g0881 Cmu07g0881 Cre07g1242 Lsi07g00232 Csa04g00538 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011038 1 2 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31