Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g106 ATGGGGTATGGTGGTCCTCATGCTGCTTTCTTGGCCACCTCCCAAGAGTACAAGAGGATGATGCCAGGAAGAATTATTGGAGTCAGTGTTGATGCTTCAGGAAAGCCTGCTCTGCGTATGGCAATGCAGACGAGAGAACAACATATCCGGAGGGACAAGGCTACGAGCAACATATGCACTGCTCAGGCATTACTTGCAAATATGGCTGCTATGTTTGCTGTTTATCATGGGCCTGAAGGCCTTAAAACCATTGCTCAACGTGTCCATGGTCTTGCTGGGGTATTTGCACTTGGACTGAAGAAACTTGGGACAGTGGAAGTCCAGGGCCTTCCCTTCTTTGACACCGTGAAGGTTAAGTGTGCTGATGCACATGCGATTGCTGATGCTGCTTGCAAGAGTGAGATAAATTTGCGAATTGTGGACTCAAAAACAATCACTGTTTCCTTTGATGAAACAACAACAATAGAGGATGTGGACAAGCTTTTCAAAGTTTTTGCATGTGGCAAGCCTGTCAATTTCACTGCTGCATCCCTTGCACCAGAAGTTCAGACTGTGATCCCTTCTGGGCTCATAAGAGAAAGCCCATTTCTCACTCATCCAATCTTCAACTTGTATCATACAGAACATGAGTTGCTAAGATACATGCAAAGGCTACAATCAAAGGATCTTTCATTATGCCATAGTATGATTCCTTTGGGATCTTGTACAATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGACTCTTTCTCATTGCAACCCAATGCTGGTGCTTCTGGCGAGTATGCTGGCCTGATGGTTATTCGTGCATATCATAAGTCAAGAGGAGACCACCACCGTGATGTGTGCATCATACCTGTTTCGGCACATGGGACTAATCCTGCAAGTGCTGCTATGTGTGGAATGAAAATTGTTGCTGTTGGAACTGATGCCAAGGGAAACATCAACATTGAAGAGTTAAGGAAGGCTGCTGAAGCAAATAAGGAAAACCTATCTGCTCTTATGGTTACATATCCTTCAACCCATGGAGTCTATGAAGAAGGGATAGATGAAATATGTAAGATAATTCATGACAATGGAGGTCAAGTTTACATGGATGGTGCTAACATGAATGCACAGGTGGGTCTCACAAGCCCAGGTTGGATTGGAGCTGATGTTTGCCATCTAAATCTCCACAAAACATTTTGCATTCCCCATGGTGGAGGTGGTCCTGGCATGGGTCCTATTGGTGTGAAAAAACACCTGGCACCATTTCTGCCTTCCCATCCTGTGGTATCTACGGGTGGTATACCAGCTCCTGACAAATTACAGCCACTTGGTACCATATCTGCTGCACCTTGGGGCTCTGCACTTATTTTGCCAATATCATATACTTACATAGCAATGATGGGATCTAAGGGACTCACTGATGCATCAAAGATAGCTATTCTCAATGCAAACTACATGGCAAAACGTTTGGAGAAGCACTATCCCATTCTTTTCCGTGGCGTCAATGGAACAGTTGCCCATGAATTCATTGTTGACTTGAGAGGCTTCAAGAATACTGCTGGGATAGAGCCTGAAGATATTGCTAAGCGTCTTATGGACTATGGATTTCATGGACCGACAATGTCATGGCCAGTGCCTGGTACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCAGAGTTAGACAGGTTTTGTGATGCTCTTATCTCCATTAGAAAAGAAATTGCACAGATTGAGAATGGAAAAGCTGACGTTCACAACAATGTCCTAAAGGGTGCTCCTCATCCCCCATCCCTGCTTATGGGAGATACCTGGACAAAACCATACTCTCGGGAATATGCAGCCTTCCCAGCTCCCTGGCTTCGGGTTGCCAAGTTCTGGCCAACTACAGGACGTGTTGACAATGTGTACGGTGACCGCAACCTCATCTGCACTCTTCTTCCAGCATCACAGATTGAAGAACAAGCTGCAGCTACTGCCTAG 2088 45.21 MGYGGPHAAFLATSQEYKRMMPGRIIGVSVDASGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMFAVYHGPEGLKTIAQRVHGLAGVFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIADAACKSEINLRIVDSKTITVSFDETTTIEDVDKLFKVFACGKPVNFTAASLAPEVQTVIPSGLIRESPFLTHPIFNLYHTEHELLRYMQRLQSKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPGFTDIHPFAPTEQAQGYQEMFNNLGELLCTITGFDSFSLQPNAGASGEYAGLMVIRAYHKSRGDHHRDVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPDKLQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGFKNTAGIEPEDIAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRKEIAQIENGKADVHNNVLKGAPHPPSLLMGDTWTKPYSREYAAFPAPWLRVAKFWPTTGRVDNVYGDRNLICTLLPASQIEEQAAATA* 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1068283 1074131 + Vvi4g106 Vvi4g106 784885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g106 695 Coils Coil 352 375 - -
Vvi4g106 695 Coils Coil 688 695 - -
Vvi4g106 695 Pfam Glycine cleavage system P-protein 1 165 IPR020581 GO:0004375|GO:0006546
Vvi4g106 695 Pfam Glycine cleavage system P-protein 183 458 IPR020581 GO:0004375|GO:0006546
Vvi4g106 695 CDD GDC-P 208 603 IPR020581 GO:0004375|GO:0006546
Vvi4g106 695 Gene3D Aspartate Aminotransferase, domain 1 495 634 IPR015422 GO:0003824
Vvi4g106 695 SUPERFAMILY PLP-dependent transferases 205 681 IPR015424 -
Vvi4g106 695 SUPERFAMILY PLP-dependent transferases 1 165 IPR015424 -
Vvi4g106 695 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 1 693 IPR020581 GO:0004375|GO:0006546
Vvi4g106 695 Gene3D - 1 79 IPR015421 GO:0003824
Vvi4g106 695 Gene3D - 246 478 IPR015421 GO:0003824
Vvi4g106 695 TIGRFAM gcvP: glycine dehydrogenase 1 680 IPR003437 GO:0004375|GO:0006544
Vvi4g106 695 PANTHER GLYCINE CLEAVAGE SYSTEM P PROTEIN 1 693 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g106 K00281 GLDC, gcvP; glycine dehydrogenase [EC:1.4.4.2] - vvi:100266170 1397.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004393 2 1 2 3 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 42