Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1062 ATGAGGAAACGAGATTTGGCAATTCTCATGCTCTCAGCTTTCGCCATCTTCTTCTCTCTTCAGCACGAGGGTGACTTTTCCTTTAAAGAGGCGTGGTTCCATCTTTCCGACGAATACCCTATCAAATACGAAGCCGAGCGTCTCCCTCCTCCCCTTGTCGCCGATCTTAATGGCGACGGAAAGAAGGAGGTTCTTGTCGCCACTCACGACGCCAAAATTCAGGTTTTGGAGCCCCACGCCAGGCGTGTGGATGAAGGGTTCAGCGAAGCTCGTGTGCTGGTAGAGGTTTCTTTGTTGCCTGACAAGATCCGTATTTCATCTGGGAGACGAGCTGTGGCCATGGCCACGGGTGTTGTTGATAGGCATTATAAACAGGGTCAACCACAAAAGCAGGTTCTGGTTGTTGTTACCTCCGGTTGGTCTGTAATGTGTTTCGATCACAACCTCAACAAGCTATGGGAAGCAAATCTACAGGAGGATTTTCCACATAATGCTCACCATAGGGAGATAGCAATCTCAATAAGCAATTATACCCTGAAGCATGGCGATGCAGGATTGGTAATTGTTGGGGGGAGGATGGAAATGCTACCACATATTTACATGGATCCTTTTGAAGTCATTGGGATGACAGAGAAAAATGCAGAGCAGCATAGAAGAAGTGCGAATGAAAAAGAGGCCTCTGAGAATGCTGGAACTGTGGATTTGCGACACTTTGCATTTTATGCATTTGCAGGCCGATCTGGTGCAGTTAGATGGATGAGAAAGAACGAGAATATTCAAACGCTTTCATCTGATGCATCACAACTAATTCCACAGCATAACTATAAGCTTGATGCTCATGCTTTGAACACTCGTCATCCTGGAGAGTTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGGGATAGGAGAGAAGATACTTTGCTTAAGTTGGCACACTTCAGGCGGCACAAGAGGAAAACATTGAAGAAGACTCAAGGGAAAAGTACAAATTATCCTTTCCACAAGCCTGAGGAAAACCATCCTCCTGGAAAGGATGATACAAAAAAAATCTCTAACCTGATAGGAAAAGCTGCCAAGTATGCTAGTTCAGCAAAATCCAAGAAGCCGTTGCCTTATGTTCCTACCATAACAAACTACACTCAACTCTGGTGGGTTCCTAATGTTGTTGTGGCTCATCAAAGGGAAGGAATAGAAGCTGTTCACTTGCCCACTGGTCGCACTATCTGTAAGCTTCATCTTCAAGAAGGTGGTCTCCATGCTGATATTAACGGAGATGGGGTTCTAGATCATGTCCAGGTGGTTGGTGGAAATGGTGCTGAACAAACTGTTGTAAGTGGATCCATGGAAGTGCTGCGACCCTGTTGGGCTGTTGCAACCTCTGGTGTACCAGTGCGAGAACAACTTTTCAATGCTTCTATATGTCATCATTCCCCCTTTAACTTGTTCCAACATGGAGAGTTTTCCAGAAGTTTCAGTCGAACTCCAGATTTAGGTTCTCTGGAGGTTGCCACACCCATTCTCATTCCGAGGAATGATGGTCATAGACATCGTAAGGGAAGCCATGGTGACATTATCTTCTTAACAAACAGAGGGGAGGTAACATCATACTCCCCTGGCTTGCATGGTCATGATGCCATTTGGCAATGGCAGCTCTTGACGGGTGCTACATGGTCAAACCTTCCATCACCATCTGGGATGATGGAAAGTATGGTGGTTCCCACCCTGAAGGCTTTCTCATTGCGTGCGCATGATAATCGAGAACTGATCCTTGCAGCAGGAGATCAAGAAGCCATAATGATGTCTCCAGGAGGAAGCCTATTGACATCGGTTGAGCTTCCTGCAGCACCAACACATGCCTTGATCTGTGAGGATTTCTCAAATGATGGTCTCACCGACCTTATCCTTGTAACCTCCAATGGGGTGTATGGCTTTGTCCAAACCAGGCAACCGGGTGCCCTCTTCTTTAGCACCCTGGTGGGTTGCCTTATAGTTGTGATGGGAGTCATATTTGTTACCCAATATCTAAATTCCATGAAGGGGAAACCTCGTGCTTCATCGGGTCCCAGATAA 2091 46.15 MRKRDLAILMLSAFAIFFSLQHEGDFSFKEAWFHLSDEYPIKYEAERLPPPLVADLNGDGKKEVLVATHDAKIQVLEPHARRVDEGFSEARVLVEVSLLPDKIRISSGRRAVAMATGVVDRHYKQGQPQKQVLVVVTSGWSVMCFDHNLNKLWEANLQEDFPHNAHHREIAISISNYTLKHGDAGLVIVGGRMEMLPHIYMDPFEVIGMTEKNAEQHRRSANEKEASENAGTVDLRHFAFYAFAGRSGAVRWMRKNENIQTLSSDASQLIPQHNYKLDAHALNTRHPGEFECREFRESILGVMPHHWDRREDTLLKLAHFRRHKRKTLKKTQGKSTNYPFHKPEENHPPGKDDTKKISNLIGKAAKYASSAKSKKPLPYVPTITNYTQLWWVPNVVVAHQREGIEAVHLPTGRTICKLHLQEGGLHADINGDGVLDHVQVVGGNGAEQTVVSGSMEVLRPCWAVATSGVPVREQLFNASICHHSPFNLFQHGEFSRSFSRTPDLGSLEVATPILIPRNDGHRHRKGSHGDIIFLTNRGEVTSYSPGLHGHDAIWQWQLLTGATWSNLPSPSGMMESMVVPTLKAFSLRAHDNRELILAAGDQEAIMMSPGGSLLTSVELPAAPTHALICEDFSNDGLTDLILVTSNGVYGFVQTRQPGALFFSTLVGCLIVVMGVIFVTQYLNSMKGKPRASSGPR* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19328133 19343256 + Vvi4g1062 Vvi4g1062 785841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1062 696 MobiDBLite consensus disorder prediction 325 354 - -
Vvi4g1062 696 PANTHER FG-GAP REPEAT-CONTAINING PROTEIN 1 694 - -
Vvi4g1062 696 MobiDBLite consensus disorder prediction 340 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1062 - - - vvi:100264247 1410.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1062 . . Bda04g00034 . . . Bma09g00095 . . . Cma03g00709 Cma07g00454 Car03g00650 Car07g00400 Sed14g1168 Cpe19g00836 Cpe10g00645 Bhi03g00900 Tan03g2041 Cmetu04g1736 . Hepe04g1563 . . Cla01g01951 Cam01g2040 Cec04g1698 Cco04g1763 Clacu01g2062 Cmu01g1939 Cre04g1613 . . . Cone9ag1582 Lsi01g00632 . . Cme08g00898 Blo05g00814 . . . . Bpe06g00033 . . . Cmo03g00735 Cmo07g00451 . . . . . . . . . . . . . . . . . . . . . Csa06g03293 Chy02g00603 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011298 1 1 0 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31