Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1063 | ATGGCTGGGTTTTTCCCATTAGGTGGAGGGAGAGGAAGCAACCAAGACAGCAACCCACCAAACGAAATTCCTCCTGAAAGCTGTTTTTTTTACAGGAATGAAGACATCTCCTACAAGGGTTTCGAGCTATGGCAACATCAACCGCAAGAGCAACTCCATCAACGCCACCAACATCATCCACAAGACCTTTATTCATCTGGGCCTAGCTTAGGCGTGGGATCAAGTAGGAGCTCAATAAACTTGTCTGATGATTCTTCGAGATCGGCTTGCCAAGATTGTGGAAACCAAGCGAAGAAGGATTGCATTCACATGCGGTGCAGGACATGTTGTAAGAGCCGAGGGTTTCAGTGCCCAACCCATATCAAGAGCACTTGGGTTCCTGCTGCTAAAAGGCGAGAGAGGCAACAACATCTCACTCTCCGTGGAGAGAATCCCAAAAGGCAGAGAGAGAATCCAAGCTCTTCCGCTCTCGCCTGCACTCGTTTGCCCACCCACACGTCAGGGTTGGAAATAGCAAATTTTCCTTCAGAAGTGAACTCTCCCGCAGTGTTCCGCTGTGTTAGAGTTAGCTCCATTGACGAGACTGACGATCAGTACGCATACCAGACGGCTGTCAACATTGGAGGACATGTGTTCAAGGGAATTCTCTATGATCATGGTCCGGAAGGTCATTACGGTGGAGGCGAGAGTTCCTCCGCCGGTGGCGGAGGACTTCAGCAGCTTAATCTCATTACTGGTGCCGCAGCAGCCGCCAGTACCTCCACTGCCACAGCCGCCACCACTGGTAGTGGCAGTGCCGGTGCAGCCGCCGCATTTCTTGATCCTTCTTTATACCCAGCTCCCCTTAACACCTTCATGGCTGTAGCTGAAGTTATTGGTCCTTCCTTTAAGCTACTTAGAGGAAAACCTAGTGGGCTTCTCTCTTTCAATTTTCCGAAGGGATCTATTCATTGA | 954 | 50.21 | MAGFFPLGGGRGSNQDSNPPNEIPPESCFFYRNEDISYKGFELWQHQPQEQLHQRHQHHPQDLYSSGPSLGVGSSRSSINLSDDSSRSACQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLTLRGENPKRQRENPSSSALACTRLPTHTSGLEIANFPSEVNSPAVFRCVRVSSIDETDDQYAYQTAVNIGGHVFKGILYDHGPEGHYGGGESSSAGGGGLQQLNLITGAAAAASTSTATAATTGSGSAGAAAAFLDPSLYPAPLNTFMAVAEVIGPSFKLLRGKPSGLLSFNFPKGSIH* | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 19351212 | 19359850 | - | Vvi4g1063 | Vvi4g1063 | 785842 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1063 | 317 | MobiDBLite | consensus disorder prediction | 61 | 86 | - | - | |
Vvi4g1063 | 317 | Pfam | Domain of unknown function (DUF702) | 88 | 222 | - | - | |
Vvi4g1063 | 317 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 291 | IPR007818 | GO:0003700|GO:0006355 | |
Vvi4g1063 | 317 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Vvi4g1063 | 317 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 90 | 131 | IPR006510 | - | |
Vvi4g1063 | 317 | MobiDBLite | consensus disorder prediction | 49 | 86 | - | - | |
Vvi4g1063 | 317 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 291 | - | - | |
Vvi4g1063 | 317 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 174 | 221 | IPR006511 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Vvi4g1063 | Vvi18g1034 | ECH | |
Vvi3g16 | Vvi4g1063 | ECH |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14698 | PF05142 | DUF702 | 6.20E-59 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1063 | - | - | vvi:100250664 | 482.256 |