Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1063 ATGGCTGGGTTTTTCCCATTAGGTGGAGGGAGAGGAAGCAACCAAGACAGCAACCCACCAAACGAAATTCCTCCTGAAAGCTGTTTTTTTTACAGGAATGAAGACATCTCCTACAAGGGTTTCGAGCTATGGCAACATCAACCGCAAGAGCAACTCCATCAACGCCACCAACATCATCCACAAGACCTTTATTCATCTGGGCCTAGCTTAGGCGTGGGATCAAGTAGGAGCTCAATAAACTTGTCTGATGATTCTTCGAGATCGGCTTGCCAAGATTGTGGAAACCAAGCGAAGAAGGATTGCATTCACATGCGGTGCAGGACATGTTGTAAGAGCCGAGGGTTTCAGTGCCCAACCCATATCAAGAGCACTTGGGTTCCTGCTGCTAAAAGGCGAGAGAGGCAACAACATCTCACTCTCCGTGGAGAGAATCCCAAAAGGCAGAGAGAGAATCCAAGCTCTTCCGCTCTCGCCTGCACTCGTTTGCCCACCCACACGTCAGGGTTGGAAATAGCAAATTTTCCTTCAGAAGTGAACTCTCCCGCAGTGTTCCGCTGTGTTAGAGTTAGCTCCATTGACGAGACTGACGATCAGTACGCATACCAGACGGCTGTCAACATTGGAGGACATGTGTTCAAGGGAATTCTCTATGATCATGGTCCGGAAGGTCATTACGGTGGAGGCGAGAGTTCCTCCGCCGGTGGCGGAGGACTTCAGCAGCTTAATCTCATTACTGGTGCCGCAGCAGCCGCCAGTACCTCCACTGCCACAGCCGCCACCACTGGTAGTGGCAGTGCCGGTGCAGCCGCCGCATTTCTTGATCCTTCTTTATACCCAGCTCCCCTTAACACCTTCATGGCTGTAGCTGAAGTTATTGGTCCTTCCTTTAAGCTACTTAGAGGAAAACCTAGTGGGCTTCTCTCTTTCAATTTTCCGAAGGGATCTATTCATTGA 954 50.21 MAGFFPLGGGRGSNQDSNPPNEIPPESCFFYRNEDISYKGFELWQHQPQEQLHQRHQHHPQDLYSSGPSLGVGSSRSSINLSDDSSRSACQDCGNQAKKDCIHMRCRTCCKSRGFQCPTHIKSTWVPAAKRRERQQHLTLRGENPKRQRENPSSSALACTRLPTHTSGLEIANFPSEVNSPAVFRCVRVSSIDETDDQYAYQTAVNIGGHVFKGILYDHGPEGHYGGGESSSAGGGGLQQLNLITGAAAAASTSTATAATTGSGSAGAAAAFLDPSLYPAPLNTFMAVAEVIGPSFKLLRGKPSGLLSFNFPKGSIH* 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19351212 19359850 - Vvi4g1063 Vvi4g1063 785842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1063 317 MobiDBLite consensus disorder prediction 61 86 - -
Vvi4g1063 317 Pfam Domain of unknown function (DUF702) 88 222 - -
Vvi4g1063 317 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 291 IPR007818 GO:0003700|GO:0006355
Vvi4g1063 317 MobiDBLite consensus disorder prediction 1 26 - -
Vvi4g1063 317 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 90 131 IPR006510 -
Vvi4g1063 317 MobiDBLite consensus disorder prediction 49 86 - -
Vvi4g1063 317 PANTHER PROTEIN SHORT INTERNODES 1 291 - -
Vvi4g1063 317 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 174 221 IPR006511 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1063 Vvi18g1034 ECH
Vvi3g16 Vvi4g1063 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14698 PF05142 DUF702 6.20E-59 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1063 - - vvi:100250664 482.256