Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1065 ATGAAGGCCCGGCATCACAGTGTGGTTCTTGTGATACTGCTGGGTGTTTTGGTGGCAAATGCTCCGGGTCAAACCCTAGCTTCCAATTCAGTTCCAGCCTTCGTGCAAAACACAATCTACGCCAACAAGATTGCCATTTTCTCCAAATCCTATTGCCCGTATTGCTTGCGGGCAAAGCGCATCTTTAGCGAACTGCATGAGGAACCTTTTGTTGTGGAGCTTGATCATAGAGATGATGGGACTCAAATTCAGAATGTCCTTCTAGATTTGGTGGGTCGAAGCACTGTTCCACAAATATTTGTGAATGGCAAGCATATTGGTGGCTCTGATGACCTCAGAAATGCAGTCCTGAGCGGTCAGCTGCAGAAACAACTCGGTACAAGTTGA 387 47.03 MKARHHSVVLVILLGVLVANAPGQTLASNSVPAFVQNTIYANKIAIFSKSYCPYCLRAKRIFSELHEEPFVVELDHRDDGTQIQNVLLDLVGRSTVPQIFVNGKHIGGSDDLRNAVLSGQLQKQLGTS* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19373392 19378100 - Vvi4g1065 Vvi4g1065 785844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1065 128 CDD GRX_GRXh_1_2_like 43 123 - -
Vvi4g1065 128 Pfam Glutaredoxin 44 106 IPR002109 -
Vvi4g1065 128 PANTHER GLUTAREDOXIN 2 8 127 - -
Vvi4g1065 128 TIGRFAM GRX_euk: glutaredoxin 44 124 IPR011899 -
Vvi4g1065 128 PRINTS Glutaredoxin signature 44 62 IPR014025 -
Vvi4g1065 128 PRINTS Glutaredoxin signature 89 102 IPR014025 -
Vvi4g1065 128 PRINTS Glutaredoxin signature 103 116 IPR014025 -
Vvi4g1065 128 SUPERFAMILY Thioredoxin-like 33 126 IPR036249 -
Vvi4g1065 128 PANTHER GLUTAREDOXIN-C3 8 127 - -
Vvi4g1065 128 Gene3D Glutaredoxin 25 128 - -
Vvi4g1065 128 ProSiteProfiles Glutaredoxin domain profile. 32 128 - -
Vvi4g1065 128 ProSitePatterns Glutaredoxin active site. 46 61 IPR011767 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1065 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - vvi:100241967 242.662
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28