Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1068 ATGACAGCTCTTGCTTCAGTCTCGGCATCTGCATGGATCCCCGAGGACGACCTCTTGTTGAAGAACGCCGTCGAGGCGGGGGCTTCTTTGGAAGCACTTGCTAAAGGTGCAGTGCAATTCTCTCGCAGATTTACAGTCCAAGAACTAAAAAACCGATGGCATTCTCTCCTCTATGATCCTGATATTTCAGCTGAAGCTTCTGCATGCATGGTTCAGTTTGAACCTTCAGCATCCAATTATTCGTTCAAATCTAACAGATCGGGTAATTGTAAAGAAAATGTAGAGGTTCTTGGAAAAAGAAAAGTTGAAAGCATTCGTAGAAAGTATCATGCTATGCGGAAGAGGATTCACAATGTGCCAAATGCTGATGGCTATATGTGCAATGGAGGTGGTTGTGAAGAGCATATAGTTCTTGATAATGAGCCTCCTGTTGGCAGTTATGCGCTGGGAGATCGTGTCTTGAGCCATTTTGGTCTTCAAGATAATGTACCCCAAGATATTCCTCATATTATAGGAGATAATTTAGTTGACTTCGGGAATTGCTCAGGCTTTGAGGACAGAGGGCTTCCAGATAGAAACCTATTCAATAACAATGATTTTGAGAGAAAGCCCTTGTCTACTCTTGATTCACTAAATACAAATTTAGGAAATGTTGGCTCTGAATTCGGAGGAGGACAGCATTGTGAATCACCTGTTTCAGATGGTAGTGCTTCACTTCACCAAATGGGGTTTCCATCACCACTTCCTAGGGTGCCTCTGTGGAAAACAATTGAGGACATTTCAGCACCTGTGATGCCAATCAATGTCAACCTGGGAGATAGAACTGTAAGTGCAGAAGAGACATTGACACTTGCTGCTGCTGCTGATGGTAATAAACCATGCTCATCAGGGTATGCTGTCCATTCACAGCCAACATTGAAAGACACATGCGTTGGATTAAATAACTCAACTGCTATCACAGATGGTGAGTTTGCAGATCTTTCAGATTCTCTCTTGAACTTCTCAGATGAGAATGAGCTTCTCTTTATGGAGGCTGATGGGAAAGACCCAATGGATAAGTCTTGTTTGGATAATCTTGACTCAGTTCTGTTGAGTTCTCCCAATGAAGTTCATGTTGATGATATGGCCAATATTAGTGACCCTGAGACATTGATTTCAGGTACATCGATTGTAATACATGGCAGTGCATGTCCTGCTGAATTAGTTGTTAGCGCTGACCCGTTACAATCCAGTCACAGCAATCAGGAAGGTGTTCATTCAGAGGTCACTATGCCATCATCTACATTAATTTCAAATCCTCATTCTTCTGAACTGCAGGAAGGGGTTATGTACTGCACATTGAATACTGAGGACAGTGAAATCCCATACAATGATGATAATTTCTTGCCTGCTACATTTGCTTCCACAACACAGCCAATTTTTGAAGAGGCTTGTGAGCCAGCATTCTCCTCTGACATCCAGAAGGACAGTGAACAAGCACCAAGCTTAATGAATAAAGATAAAAATCCTGCACCATCTTTCAAGGCTCCCCAGATGATAGGAAAAGATAGAATGCCAGAAATTGTTCCAGACCACCAATTTATTGGTTATGGAAACAGATCTGAATTGTCTGGTGACAACTGTTTGGCTACAGCTTCCAGACATTTTAACAGCATTCCTGTAGTCCCAAGTCATCATAGTTCAGCACATGCAACTCCAAACTCTGTCATGGATGGAGCTCCTGGGCGAGGGGTTCTAAATGTCAAATCAAGGGAAAAAGAAGCTCCAGGTACATATGGGGAGCATTTATTTTTACATGCAGGATCAGGTTCCACCAAAATGAATTTTCTGGAACCAATAAACTCCTTAATGTCTGATCAAGAGGAATCTGAAAGTGATGATGATGTGCCCTACTTTTCTGACATCGAAGCAATGATACTTGAGATGGACTTGTGTCCAGAAGATCAGGATTCATATATTGGTAGCAAAGTCTCAAGATATCAACATGAGGATGCTAGGAAGGTGATCATAAGGTTAGAACAGTGTGCTCAATCTTCAATGCAAAGAGCTATTGCATCTCAATGTGCACTTGCCATCTTCTATGGCCGCCATTTGAAGCATTATATTAAAAAGGCTGAGGTAATACTTGGTAGAGCAACAAATGAGATTGATGTTGATATTGACTTGTCAAAGGAAGGGCGTGCTAATAAAATATCTAGACGGCAGGCTATCATAAGGATGCAAGGGGATGGATCTTTCTTATTGAAGAATCTTGGGAAGAATGTAATTTTATTGAATGGCCAAGAAGTTGCTACTGGACAGGTTGGGGGTCTTAGTTCAAGTAGTTTGATAGAGATAAGGGGAATGAGATTTGTGTTTGAAGTGAATCAAAAATCTGTGAGGCGGTATCTGGCAAATGTTGCCAAAAAAGGCCAAGTAAAGAGCACCAATTTTGAATGGTCCCCTAATGGGGTTCCATGA 2460 41.71 MTALASVSASAWIPEDDLLLKNAVEAGASLEALAKGAVQFSRRFTVQELKNRWHSLLYDPDISAEASACMVQFEPSASNYSFKSNRSGNCKENVEVLGKRKVESIRRKYHAMRKRIHNVPNADGYMCNGGGCEEHIVLDNEPPVGSYALGDRVLSHFGLQDNVPQDIPHIIGDNLVDFGNCSGFEDRGLPDRNLFNNNDFERKPLSTLDSLNTNLGNVGSEFGGGQHCESPVSDGSASLHQMGFPSPLPRVPLWKTIEDISAPVMPINVNLGDRTVSAEETLTLAAAADGNKPCSSGYAVHSQPTLKDTCVGLNNSTAITDGEFADLSDSLLNFSDENELLFMEADGKDPMDKSCLDNLDSVLLSSPNEVHVDDMANISDPETLISGTSIVIHGSACPAELVVSADPLQSSHSNQEGVHSEVTMPSSTLISNPHSSELQEGVMYCTLNTEDSEIPYNDDNFLPATFASTTQPIFEEACEPAFSSDIQKDSEQAPSLMNKDKNPAPSFKAPQMIGKDRMPEIVPDHQFIGYGNRSELSGDNCLATASRHFNSIPVVPSHHSSAHATPNSVMDGAPGRGVLNVKSREKEAPGTYGEHLFLHAGSGSTKMNFLEPINSLMSDQEESESDDDVPYFSDIEAMILEMDLCPEDQDSYIGSKVSRYQHEDARKVIIRLEQCAQSSMQRAIASQCALAIFYGRHLKHYIKKAEVILGRATNEIDVDIDLSKEGRANKISRRQAIIRMQGDGSFLLKNLGKNVILLNGQEVATGQVGGLSSSSLIEIRGMRFVFEVNQKSVRRYLANVAKKGQVKSTNFEWSPNGVP* 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19406006 19413705 + Vvi4g1068 Vvi4g1068 785847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1068 819 CDD FHA 703 789 IPR000253 GO:0005515
Vvi4g1068 819 Pfam FHA domain 707 779 IPR000253 GO:0005515
Vvi4g1068 819 PANTHER MICROSPHERULE PROTEIN 1 1 809 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vvi4g1068 819 PANTHER FHA DOMAIN PROTEIN 1 809 - -
Vvi4g1068 819 SUPERFAMILY SMAD/FHA domain 696 790 IPR008984 GO:0005515
Vvi4g1068 819 ProSiteProfiles Forkhead-associated (FHA) domain profile. 707 763 IPR000253 GO:0005515
Vvi4g1068 819 MobiDBLite consensus disorder prediction 556 577 - -
Vvi4g1068 819 Pfam N-terminal region of micro-spherule protein 12 78 IPR025999 -
Vvi4g1068 819 Gene3D - 649 799 - -
Vvi4g1068 819 SMART FHA_2 706 763 IPR000253 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1068 - - - vvi:100266115 1629.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1068 Vvi18g1039 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1068 . . Bda04g00031 . . . Bma09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1662 Cone9ag1585 . . . . Blo05g00819 . . . . Bpe06g00029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67