Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g107 ATGTCTCGAATGAAACATCTGCTCCGAAAACTCCATATCGGAGGAAGCCTCAATGAGCACCAACGGATACCCGAGACCCGACCCGTGATCAATCCGAGTCCGAGTCCGAATCAGTCATCCCCCGTGGCCGCGGCGGCTCCATCGTCGGCATTGGGGAGCGTGGGAGGCGGTGATGCGGTGGATCGGGCGGCGGTGGATTCACAAGATGCTGCAGTCGATTTCAGTTTCCTGGAGGAGGAGTTTCAGGTACAGCTGGCTCTGGCCATATCCGCCTCGGATCCCGATGCGCGAGATGACCGAGAGACGGCTCAGATCAAAGTAGCCAAGCGGATTAGCTTGGGGTGTTCGCCGTCCACGACCGACACTGAAACCCTAGTTGAGTTGCTCTCGCTTCGATACTGGAACTATAATGCTGTAAACTACGATGAAAAAGTGATGGATGGGTTTTATGATGTATATGGTATTACTGCAAATTCAGTTGTGCAAGGAAAGATGCCATTGCTCGTTGATCTACAAGCAATTTCTGTTCTGGATAATGTTGATTATGAAGTGATTTTGGTAGACCGCATGATTGATCCTGATCTGCGAGAACTTGAGGATAAAGCTTATTCTTTGTCCATGGAGTACCAAGTTTCTGATCAGTTGACTATTTTAGATGGGTTGGTCCAGAAAATTGCAGATATGGTTGTTGAGAGAATGGGTGGTCCTGTTGGTGATGCTGATGAAATGTTGAAAAGATGGACTATCAGAAGTTATGAGTTGCGGAGTTCTCTGAACACTATCATCCTTCCCCTTGGACGGCTGGATATTGGGCTTTCACGCCATAGGGCCTTGCTCTTTAAGGTGCTAGCTGATAGGATTAATCTTCCATGTCTGCTGGTTAAAGGGAGCTACTACACGGGTACTGATGACGGGGCCATAAACCTGATTAAAATTGATAATGGAAGTGAATATATAATTGATCTAATGGGTGCCCCGGGTGCTCTAATTCCTGCTGAGGTACCCAGTAGTCATCATCAAAATTTTGGACTAGATTCAGAAGAAGCACCATTTATAGGCATTCGATCGAAAGGGGATGACAGGAGTCCTGTTGAAAAATTTGAAACTGAGAGATTTGAAAATGAATTTGGGAACCTTCTTCCTTCACTACGTAAATTATGTGAAGGCTCATCGGGAACCTGTGGGAAAGCATCACCTGCACAAAAGATGAAAGTTAAAGATGTTTCCAAATATGTCATCAGTGCAGCAAAAAACCCAGAATTCGCACAGAAACTACATGCTGTTTTATTAGAGAGTGGTGCATCGCCTCCACCAGATTTGTTTTCGGATATAAATTCCCGGGGTCAGGTAGAGCAGAAAGTCCTTGAGCAAATCCATATGGCAAAAGGGAAACAAGTGGATCATGGGGTTTGGTATTCTCCTGGTGAGTTTTTGTTGAACAGTGAGCAACCTCTCATGCCCTCTCACCAGGTGGAAACAAATGTCACCAACTCAGACTTCTCTTTGCCTTCTGATACTACAAGTGAGGGATTTATACTTATTGGTGCTGGAGCTAATGGAATGATCCGCACTAATGCTACAGGAGAAACATGCCAAAGACAACCTGAAAATGCCTTAGTTAGTGATGGTGGACCCTGCTTTCAGGATAATATAGGGAGAATTCTTAGTAACATTGGAACAGAGAAGGAATCTGCTTTGGGATTAATGGAAACAGCCAACGGTGCCTTGCATATTCCTTCCAATGCTCACAGTGAGCAGATCAACCCAATGCTGGCTGAGGTTGCGGAATGGGAAATCCCATGGGAGGATCTTCAGATTGGTGAACGTATTGGTATTGGCTCATATGGTGAGGTTTACCGAGCAGATTGGAATGGCACTGAGGTTGCTGTGAAGAAGTTCCTAGCCCAAGATTTCTCTGGTGATGCATTGGTTCAGTTTAGATACGAGGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGGGGAAGTTTGTATAGGTTATTGCACAGATCAAATATTCAACTTGATGAAAAGAGGAGATTGCGAATGGCTCTTGATGTGGCCAAGGGAATGAATTACTTGCACACAAGCCATCCTACTATTGTACATAGAGATCTGAAATCTCCAAATCTCCTTGTTGATAAAAACTGGGTTGTTAAGGTTTGTGATTTTGGGTTGTCACGTCTGAAGCACCATACGTTTCTGTCTTCAAAGTCTACTGCAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAGTGTGATGTGTATAGCTTCGGTGTGATACTATGGGAGTTGGCTACCTTGCGCATCCCATGGAGTGGGATGAATCCGATGCAGGTTGTTGGAGCTGTTGGATTTCAAGACAGACGCCTAGAAATCCCAGAAGAGGTTGATCCAATGGTTGCACAGATAATAAATGATTGTTGGGAAGTTGAGCCACGCAAGCGGCCGTCGTTCTCACAGCTCATGTCTCGTCTCAAGCATCTTCAGCATCTGGTGTTTGAAAGAGCAAGCTCTTCAAGACAAGCACAAGTGCAATAG 2631 45.31 MSRMKHLLRKLHIGGSLNEHQRIPETRPVINPSPSPNQSSPVAAAAPSSALGSVGGGDAVDRAAVDSQDAAVDFSFLEEEFQVQLALAISASDPDARDDRETAQIKVAKRISLGCSPSTTDTETLVELLSLRYWNYNAVNYDEKVMDGFYDVYGITANSVVQGKMPLLVDLQAISVLDNVDYEVILVDRMIDPDLRELEDKAYSLSMEYQVSDQLTILDGLVQKIADMVVERMGGPVGDADEMLKRWTIRSYELRSSLNTIILPLGRLDIGLSRHRALLFKVLADRINLPCLLVKGSYYTGTDDGAINLIKIDNGSEYIIDLMGAPGALIPAEVPSSHHQNFGLDSEEAPFIGIRSKGDDRSPVEKFETERFENEFGNLLPSLRKLCEGSSGTCGKASPAQKMKVKDVSKYVISAAKNPEFAQKLHAVLLESGASPPPDLFSDINSRGQVEQKVLEQIHMAKGKQVDHGVWYSPGEFLLNSEQPLMPSHQVETNVTNSDFSLPSDTTSEGFILIGAGANGMIRTNATGETCQRQPENALVSDGGPCFQDNIGRILSNIGTEKESALGLMETANGALHIPSNAHSEQINPMLAEVAEWEIPWEDLQIGERIGIGSYGEVYRADWNGTEVAVKKFLAQDFSGDALVQFRYEVEIMLRLRHPNVVLFMGAVTRPPNLSILTEFLPRGSLYRLLHRSNIQLDEKRRLRMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRLKHHTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRIPWSGMNPMQVVGAVGFQDRRLEIPEEVDPMVAQIINDCWEVEPRKRPSFSQLMSRLKHLQHLVFERASSSRQAQVQ* 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1079722 1090460 + Vvi4g107 Vvi4g107 784886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g107 876 Pfam Protein tyrosine and serine/threonine kinase 604 856 IPR001245 GO:0004672|GO:0006468
Vvi4g107 876 Gene3D Phosphorylase Kinase; domain 1 597 681 - -
Vvi4g107 876 SUPERFAMILY Protein kinase-like (PK-like) 582 855 IPR011009 -
Vvi4g107 876 PANTHER SERINE-THREONINE PROTEIN KINASE 580 871 - -
Vvi4g107 876 PANTHER SERINE-THREONINE PROTEIN KINASE 66 348 - -
Vvi4g107 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Vvi4g107 876 SMART serkin_6 604 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g107 876 MobiDBLite consensus disorder prediction 15 51 - -
Vvi4g107 876 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 580 871 - -
Vvi4g107 876 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 66 348 - -
Vvi4g107 876 ProSiteProfiles Protein kinase domain profile. 604 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g107 876 Gene3D Transferase(Phosphotransferase) domain 1 683 868 - -
Vvi4g107 876 Pfam Ethylene-responsive protein kinase Le-CTR1 127 330 - -
Vvi4g107 876 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
Vvi4g107 876 CDD STKc_MAP3K-like 610 856 - -
Vvi4g107 876 PRINTS Tyrosine kinase catalytic domain signature 678 691 IPR001245 GO:0004672|GO:0006468
Vvi4g107 876 PRINTS Tyrosine kinase catalytic domain signature 717 735 IPR001245 GO:0004672|GO:0006468
Vvi4g107 876 PRINTS Tyrosine kinase catalytic domain signature 764 774 IPR001245 GO:0004672|GO:0006468
Vvi4g107 876 PRINTS Tyrosine kinase catalytic domain signature 783 805 IPR001245 GO:0004672|GO:0006468
Vvi4g107 876 PRINTS Tyrosine kinase catalytic domain signature 827 849 IPR001245 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76588 PF07714 PK_Tyr_Ser-Thr 4.10E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g107 K04424 - vvi:100264622 1694.48