Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1070 ATGAAGATCACCATTTGCAGCAAAACCTTATCCTTCCTCTTCATTCTCTTCCTCACAGCCTTCTTCTCCACGCCAATATCTGAAGCCTGCCATGCCATTGATAAAGCGGCACTACTTGATTTCAAGCACAAGATCACCTCCGACCCTTCAAATCTCTTGAAGTCATGGACATCTACCTCGAATTGCTGCACTACTTGGGAAGGCGTCGCCTGCGACTCCTCTGGCAGAGTCGTCAATGTGTCGCAGCTGGGCAAGTTGTCGCATCTCACCCATCTCTTTCTTGACGCAAACAAGCTCAATGGCTCCATACCCACAACGTTTCGACACCTTGTTCGGCTGCAGAAGCTGTATCTTGATAGCAATTACTTGTCTGGTGTTCTTCCTTCAACTGTCATTGAAACTTTAACATCGCTCTCTGAACTGGGTCTTTCAGGAAATCAGTTTTCGGGTTCGGTTCCGTCTTCGATTGGCAAGTTGGTTTTGCTTACTAAACTTGATGTCCATGGAAACAGGATCTCTGGTAGTATTCCTCCAGGTATCGGCAAGCTGAAGAGTCTCAAGTATCTTGATTTATCTGAAAATGGCATAACTGGGAGTCTTCCATCGTCGCTGGGTGGGCTTTCCGAATTAGTACTACTCTATCTCAACCATAACCAGATCACTGGAAGCATTCCTTCTTCAATTTCCGGACTCAGTTCTTTGCAATTCTGCCGGTTGTCAGAAAATGGGATCACTGAGAACAACAAGCTCACCGGAAAACTGCCCACAACCATCGGCCATCTCACCTCTCTTACTGACATATTCTTCTCCAATAACTATTTTAGTGGCAAGATACCTTCAAGTATCGGTAATATACAAAACCTTCAGACGCTTGATTTATCGAAAAACCTACTCTCTGGTGAAATTCCCCGTCAGATTGCTAATTTACGCCAGTTACAGGCCTTAGATTTATCGTTCAATCCGCTCGAACTCGAAAGCATTCCAACCTGGTTTGCGAAAATGAATCTTTTTAAGCTCATGTTAGCTAAAACTGGGATTGCGGGGGAGCTTCCAAGCTGGTTAGCTTCATCACCCATAGGTGTACTTGATTTATCTAGCAATGCATTAACAGGGAAATTGCCTCATTGGATAGGGAACATGACCAACCTTTCGTTCCTCAATTTATCCAACAATGGCCTCCACTCTGCGGTACCAGTTGAATTCAAAAACCTTTCGCTGCTGACGGATCTCGACCTCCACTCAAACAACTTCACTGGACACCTGAAAACGATACTGACGAAAAGCGTTCAATTCGCACTTGGCCGGTTTAACTCCATTGATCTTTCTAGCAATATGTTCATGGGTCCCATTGACCAGAACATTGGAGAGAAGCCTTCAACCGCCTCTATCCAATCCCTGATTTTATCTCACAACCCACTGGGAGGGTCCATACCCAAGTCGTTAGGGAAACTGAGGGAATTGGAGGTAGTGGAGCTCGTGGGTAATGGGCTTTCGGGGACAATACCAGTGGAGCTCAGTGACGCCAAGAAACTGCAAACAATTAAGCTTTCGCAAAACAAGCTGAGTGGGGGCATTCCGTATAAAGTGCTGAATTTGGATGAGCTTCAACAATTCAATGTATCCCAAAACCAGCTGAGTGGGAGGATCCCTCCACACAAAGCCCAATTCCCTCCATCTGCCTTCATGGATAATCCCGGCTTGTGTGGTGCTCCACTCCCACCTTGTAAGCACTCCTAG 1737 45.94 MKITICSKTLSFLFILFLTAFFSTPISEACHAIDKAALLDFKHKITSDPSNLLKSWTSTSNCCTTWEGVACDSSGRVVNVSQLGKLSHLTHLFLDANKLNGSIPTTFRHLVRLQKLYLDSNYLSGVLPSTVIETLTSLSELGLSGNQFSGSVPSSIGKLVLLTKLDVHGNRISGSIPPGIGKLKSLKYLDLSENGITGSLPSSLGGLSELVLLYLNHNQITGSIPSSISGLSSLQFCRLSENGITENNKLTGKLPTTIGHLTSLTDIFFSNNYFSGKIPSSIGNIQNLQTLDLSKNLLSGEIPRQIANLRQLQALDLSFNPLELESIPTWFAKMNLFKLMLAKTGIAGELPSWLASSPIGVLDLSSNALTGKLPHWIGNMTNLSFLNLSNNGLHSAVPVEFKNLSLLTDLDLHSNNFTGHLKTILTKSVQFALGRFNSIDLSSNMFMGPIDQNIGEKPSTASIQSLILSHNPLGGSIPKSLGKLRELEVVELVGNGLSGTIPVELSDAKKLQTIKLSQNKLSGGIPYKVLNLDELQQFNVSQNQLSGRIPPHKAQFPPSAFMDNPGLCGAPLPPCKHS* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19448560 19450492 + Vvi4g1070 Vvi4g1070 785849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1070 578 SUPERFAMILY RNI-like 81 523 - -
Vvi4g1070 578 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 246 578 - -
Vvi4g1070 578 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 81 280 - -
Vvi4g1070 578 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 3 76 - -
Vvi4g1070 578 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Vvi4g1070 578 Pfam Leucine rich repeat 361 417 IPR001611 GO:0005515
Vvi4g1070 578 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Vvi4g1070 578 Pfam Leucine rich repeat 78 123 IPR001611 GO:0005515
Vvi4g1070 578 PRINTS Leucine-rich repeat signature 186 199 - -
Vvi4g1070 578 PRINTS Leucine-rich repeat signature 309 322 - -
Vvi4g1070 578 SMART LRR_sd22_2 110 137 - -
Vvi4g1070 578 SMART LRR_sd22_2 380 401 - -
Vvi4g1070 578 SMART LRR_sd22_2 207 233 - -
Vvi4g1070 578 SMART LRR_sd22_2 285 311 - -
Vvi4g1070 578 SMART LRR_sd22_2 508 534 - -
Vvi4g1070 578 SMART LRR_sd22_2 183 206 - -
Vvi4g1070 578 Gene3D Ribonuclease Inhibitor 81 325 IPR032675 -
Vvi4g1070 578 Gene3D Ribonuclease Inhibitor 326 578 IPR032675 -
Vvi4g1070 578 Gene3D Ribonuclease Inhibitor 27 80 IPR032675 -
Vvi4g1070 578 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vvi4g1070 578 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 81 280 - -
Vvi4g1070 578 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 246 578 - -
Vvi4g1070 578 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 76 - -
Vvi4g1070 578 SMART LRR_typ_2 110 133 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 309 333 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 135 158 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 380 403 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 285 308 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 86 109 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 183 206 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 159 182 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 404 427 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 207 231 IPR003591 -
Vvi4g1070 578 SMART LRR_typ_2 532 563 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1070 - - - vvi:100259170 1047.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1070 . . . . . . . . . . . Cma07g00448 . . Sed05g3625 . . Bhi03g00895 Tan03g2047 Cmetu04g0895 . Hepe04g1569 . . Cla01g01956 Cam01g2045 Cec04g1703 Cco04g1768 Clacu01g2067 Cmu01g1944 Cre04g1618 . . Cone6ag1663 Cone9ag1586 Lsi01g00627 . . Cme08g00903 Blo05g00821 . . . . . . . . . Cmo07g00445 . . . . . . . . . . . . . . . . . . . . . Csa06g03298 Chy02g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011386 0 1 2 1 0 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31