Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1071 ATGGAATGCGTTGAGAAGGCCCTGAAGAGCAGTGTGGTTAGGCCGGAGTTGGCCTTTAAATTGACCCAACAACCGGCGTGTATGGATGATATGTGCATGGGAAATGGGCAAAGCGGTGTTTCTGGTGATGACTTCTCTATAGACGACCTTCTAGACTTCACAAATGGAGGTATTGGAGAAGGACTCTTCCAAGAAGAAGATGAAGAAGACGAGGACAAGGGCTGCGGCTCCCTTTCCCCTCGTGGGGAACTAACGGAGAACGATAACTCCAACCTTACTACTACAACTTTCTCCGTGAAAGACGAGTTCCCTTCCGTTCCCGCTACCGAACTCACAGTTCCGGCGGATGATTTGGCGGACCTTGAATGGTTGTCTCATTTTGTAGAGGATTCCTTCTCGGAATACTCCGCACCTTTCCCCCACGGAACCCTAACAGAGAAGGCCCAGAACCAAACGGAAAACCCCCCTGAACCGGAAACGCCGTTGCAGATAAAGTCGTGCCTGAAGACTCCATTTCCAGCCAAGGCTAGAAGCAAACGAGCGAGAACAGGCGGTCGGGTTTGGTCTATGGGTTCTCCGTCGCTTACGGAATCATCCTCCTCGTCTTCGTCTTCCTCTTCTTCACTGGACCCGGAAGCCAGTGGCAGTGCGCAGCCGACCCCCCACCGGTGCAGCCATTGTGGGGTCCAGAAGACCCCACAGTGGAGAACCGGTCCGCTCGGTGCCAAAACCCTCTGCAACGCATGTGGGGTTCGCTACAAGTCCGGCCGACTCTTGCCTGAGTATAGACCAGCATGTAGCCCAACTTTTTCTAGCGAAATTCATTCAAATCACCACCGGAAAGTGTTGGAAATGCGGCGGAAGAAGGAGGTGACCCGGCCTGAATCCGGTTTAGCTCCGGCTGTTCCAAGTTTTTGA 918 53.27 MECVEKALKSSVVRPELAFKLTQQPACMDDMCMGNGQSGVSGDDFSIDDLLDFTNGGIGEGLFQEEDEEDEDKGCGSLSPRGELTENDNSNLTTTTFSVKDEFPSVPATELTVPADDLADLEWLSHFVEDSFSEYSAPFPHGTLTEKAQNQTENPPEPETPLQIKSCLKTPFPAKARSKRARTGGRVWSMGSPSLTESSSSSSSSSSSLDPEASGSAQPTPHRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVTRPESGLAPAVPSF* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19467931 19469492 + Vvi4g1071 Vvi4g1071 785850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1071 305 MobiDBLite consensus disorder prediction 189 232 - -
Vvi4g1071 305 CDD ZnF_GATA 223 271 IPR000679 GO:0006355|GO:0043565
Vvi4g1071 305 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Vvi4g1071 305 MobiDBLite consensus disorder prediction 143 159 - -
Vvi4g1071 305 MobiDBLite consensus disorder prediction 60 96 - -
Vvi4g1071 305 Gene3D - 215 295 IPR013088 GO:0006355|GO:0008270
Vvi4g1071 305 Pfam GATA zinc finger 224 258 IPR000679 GO:0006355|GO:0043565
Vvi4g1071 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 280 - -
Vvi4g1071 305 PANTHER GATA TRANSCRIPTION FACTOR 216 293 - -
Vvi4g1071 305 PANTHER GATA TRANSCRIPTION FACTOR 1 210 - -
Vvi4g1071 305 MobiDBLite consensus disorder prediction 138 233 - -
Vvi4g1071 305 PIRSF Txn_fac_GATA_plant 4 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi4g1071 305 SMART GATA_3 218 272 IPR000679 GO:0006355|GO:0043565
Vvi4g1071 305 PANTHER GATA TRANSCRIPTION FACTOR 1 210 - -
Vvi4g1071 305 PANTHER GATA TRANSCRIPTION FACTOR 216 293 - -
Vvi4g1071 305 MobiDBLite consensus disorder prediction 82 96 - -
Vvi4g1071 305 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1071 - - - vvi:100262474 552.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g28 Vvi4g1071 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14699 PF00320 GATA 4.20E-16 CL0167 Vvi TF