Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1072 ATGGATTCTATTATGGAAGGTTTGCAACCTTTGCAAATGACACTCTTATTCATTATTCCTTTAATCCTCTTGTTGGGTCTAGTTTCCCGGCTTCGCCGGAGGCGACCATACCCGCCTGGGCCCAAGGGTTTACCGTTGATCGGGAGTATGAATATGATGGACCAGTTAACTCACCGGGGACTGGCGAAAATCGCCAAGCAATATGCCGACATGGCCTTCGCTCACTACGGCCCATTCTGGCGTCAGATGAGGAAGCTTTGTGTTATGAAGCTCTTCAGCCGCAAACGGGCGGAGTCATGGGAGTCCGTACGAGAAGAGGTTGAGTCGACGGTCCGGACGGTGGCGAGCAGCATCGGGTCCCCTGTTAACATCGGAGAGTTGGTGTTCACACTCACTAAGAATATCATATACCGGGCTGCGTTCGGGACGAGCTCAAAGGAAGGCCAGGACGAGTTCATATCTATTTTACAGGAGTTCTCTAAACTGTTTGGTGCTTTCAATATCGCTGATTTCATCCCTTGGCTCAGCTGGGTCGATCCACAAGGACTCAACGCCAGACTCGCTAAGGCACGTAAATCGCTAGATGATGAAGTCGACACGGACATGGTGGATGACTTACTGGCTTTTTACAGTGAAGAGGCTAAAGTCAACGAGTCCGAAGATTTACAGAACGCCATCGAACTCACCAGAGATAACATTAAAGCTATCATCATGGACGTTATGTTCGGTGGTACAGAGACTGTGGCGTCTGCAATAGAGTGGGCCATGGCAGAGATGATGAAAAGCCCAGAAGATCTCAAGAAAGTTCAACAGGAACTCGCCGACGTCGTGGGTCTGAACCGAAGAGTAGAAGAGAGCGACCTCGAGAAGCTGACATACCTCAAGGTGATGATCAACGCCTGGGCTATAGGCAGAGACAAGAACTCGTGGGACGAACCAGAGACGTTCAAGCCTTCAAGGTTTCTCAAAGCGGGCGTACCCGATTTCAAAGGAAGCAATTTCGAGTTTATTCCATTTGGATCGGGTCGCCGTTCGTGCCCGGGAATGCAACTCGGACTCTACGCTCTTGAGTTGGCCGTGGTGCACCTTCTCCACTGCTTCACGTGGGAGTTGCCTGACGGCATGAAACCCAGTGAACTCGACATGGGCGACGTGTTCGGACTCACTGCGCCAAGAGCGACTCGACTCGTTGCGGTACCGAGTCCTCGCTTAGAGTGTCCTCTTTCTTGA 1230 51.3 MDSIMEGLQPLQMTLLFIIPLILLLGLVSRLRRRRPYPPGPKGLPLIGSMNMMDQLTHRGLAKIAKQYADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVREEVESTVRTVASSIGSPVNIGELVFTLTKNIIYRAAFGTSSKEGQDEFISILQEFSKLFGAFNIADFIPWLSWVDPQGLNARLAKARKSLDDEVDTDMVDDLLAFYSEEAKVNESEDLQNAIELTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMKSPEDLKKVQQELADVVGLNRRVEESDLEKLTYLKVMINAWAIGRDKNSWDEPETFKPSRFLKAGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVVHLLHCFTWELPDGMKPSELDMGDVFGLTAPRATRLVAVPSPRLECPLS* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19492611 19494687 + Vvi4g1072 Vvi4g1072 785851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1072 409 Gene3D Cytochrome P450 296 396 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS P450 superfamily signature 243 260 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS P450 superfamily signature 337 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 Pfam Cytochrome P450 295 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 Pfam Cytochrome P450 69 299 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 131 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 232 249 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 252 278 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 299 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 336 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PRINTS E-class P450 group I signature 346 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 339 348 IPR017972 GO:0005506|GO:0016705
Vvi4g1072 409 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 295 408 - -
Vvi4g1072 409 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 69 295 - -
Vvi4g1072 409 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 2 68 - -
Vvi4g1072 409 SUPERFAMILY Cytochrome P450 31 403 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 Gene3D Cytochrome P450 29 295 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi4g1072 409 PANTHER CYTOCHROME P450 84A1-RELATED 295 408 - -
Vvi4g1072 409 PANTHER CYTOCHROME P450 84A1-RELATED 2 68 - -
Vvi4g1072 409 PANTHER CYTOCHROME P450 84A1-RELATED 69 295 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g29 Vvi4g1072 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1072 K09755 - vvi:100267863 692.575