Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1077 ATGGAAGGAGGAGCAAAGCAACAGGAGCTACCAGTTTCGGCTCTCTACAGACCTCACCTGCAACAGGAGAACCCTAGCTTCAACAGTTTACAACAGACGCAAGCGCTTTTGTGCTTCAACCAATGCGAACCAGCTCATGAATTGGACGATTCTCAGCTCGTTGGAGCGCCGACGGTTGTCGCTGGTCATGCTGAAATGGATGTGAAACAAGATGATCCTGTGGCGGAGTCGGAGACGCTGACGGAGGTGAAAGTTACGGATAAGAACGCCGGGAAGCGAAAGCGAGGTCGGCCGCCCAGGGGTCAGGCGAAACCGCCGCCGCCGAAGAAGAAGAAGGACGAGGAGGACGTCTGTTTCATATGCTTCGATGGCGGTGATCTCGTGCTCTGTGACCGCCGAGGCTGCCCTAAGGCATACCATGCGGCTTGTATTAAGCGGGACGAGTCATTCTTTCGATCAAGGGCGAAATGGAATTGTGGTTGGCATATATGTAGCAACTGTGAGAAGGCTGCCTACTATATGTGCTATACTTGTACATATTCCTTGTGCAAGGGATGCATTAAAGATGCTGATATATTGTGTGTAAGAGGGAACAAGGGATTTTGCACGACATGCATGAGAACTGTTTTGCTGGTCGAAGATAATGAGCGAGGGAACAAGGAAATGGCTCAAGTAGATTTTGATGACAAAAGTAGCTGGGAGTATCTTTTCAAGGTGTACTGGATTTACTTGAAAGGGAAGCTATCTTTGACTTTAGAGGAGCTCACTCGGGCTAAAAATCCCTGGAAGGGAGCTGGTCTTATGGCTCGTAAAGGGGAATCTTCAGATGAACTTTATGATGCTAATGATGACAAGGGTTCTAGTTCAGACAGCTCTTCCGGACATCAGGAAGCAAATACTTCTAAAAGAAGGAAAACCAAGAAACAGCCAAAGTTCCTCAACAAGGACAACTCTCTAAATGTGGGAAGATCAGATGATTCCAAGAGGACATGTTTGCCTGAAGGCACAGAATGGGCATCAAAAGAGCTCTTGGAGTTGGTTGGGCACATGAAAAATGGTGATACATCTGTTCTATCTCAGTTTGATGTCCAGGCTCTTTTGCTGGAGTACATAAAGAGAAACAACCTTCGTGATCCTCGCCGGAAAAGTCAAATCATTTGTGACATGAGGCTTAGAAACCTATTTGGGAAAGCACGTGTGGGTCATTTTGAAATGCTAAAGCTTCTCGAATCTCATTTTCTTATAAAAGAGCATTCTCGGGCAGATGATATCATGCGGGGGGGTGTTGTTGATACTCTAGCTAGCCAGGTTGATGCTGATGAAAACAATGACTACCAACTAATGATAATTAAAGATAAGAAACGTAAAACACGTAAAAAGGGTGATGAGAGAGGACCACAGACTAATCTAGATGAATATGCAGCCATTGATGTTCACAACATTAACTTGATTTACTTGCGGCGTATTTTGATGGAAAATCTAATTGAAGATGTTGAGACATTTCAAGCCAAGGTTGTTGGTTCAATTGTACGAATAAGAATTTCTGGTAGCGATCAAAAGCAAGATATGTATAGGCTTGTCCAAGTTGTAGGTACAAGCAAGGTGGATGTACCATACAAAATTGGAAAAAGGACAGCAGATGTCATGCTTGAGATATTAAATTTGAACAAGAAAGAGGTCATATCAATTGATTCAATTTCAAACCAGGAGTTCTCTGAGGATGAATGCAGACGCTTGCGCCAGAGCATAAAGTGTGGACTTGTTAACCGGTTGACTGTTGGTGAGATTCAGGAGAAAGCAATGGCACTTCAGGCAGTTAGAGTGAATGATTGGCTTGAAACGGAGATATTGCGGCTTAATCATCTACGTGATCGAGCGAGTGAAAAGGGGCACAGAAAGGAATATCCTTTGGTGCTTTACCCAAATGACACCATGGAATTTTTGTTTAATGTCTTTAGAATGGAGGCCGGGGCTTTCAATGATCTCGGACGACGCCGACTGTTTGATTTCTGGCGTGGATTTGGGCGCAAACACGGTGCTGCCGATGAGGAAAGGCGTCGTGCTGAGTTTTCGGTGGGGGGCTTAGGGTTCCGGCCGAGAGAATGTGTAGAGAAATTACAGCTTCTGAACACACCTGAGGAACGTCAGCGAAGGTTTCGTGAAACTCCAGAAAAACAAGATGTTATACCTAGATTTTCTGGCCTTAGTAAAAAGGGAAGAGAGCCATTCTCTCCAAGAAGAGGAGGTGATATTCCAAATGATATGGGGAGCAGGGCACTTAAAAATTTGGTCACCACTAATGAAAGAGGCAGAAACAAGTGTACAACATTTCTCCCTGAGAAAGAAGAAGGTGCTGCTAAGGCTCATGAGAGAGAGAAAGAATCCTCACAGAATCAGGGAGGAGATGCATATGGGTCCAACTGTTGGGAGAAACCAAGAAACCAGGTTGATCCTATTGGTTCAGTAACTGGTGGTTGTACTAATCAAGCTGTGGTGAGATCTGGATTGTCTTCTGGGGTTGCATCAGAAACTTCCACCACCACTCTTTCTACAGGGACAGTACTATCTGCTAATAATGAGAATGACAAAATATGGCACTACCAGGATCCAGCAGGGAAAATTCAAGGACCATTTGGCATGGTGCAGCTGCGGAAGTGGAGTGCAAATGGATTCTTCCCACCTCATCTGAGAATATGGAGGATGAATGAAAAGCAAGATGACTCTATACTTTTGACTGATGCAATGAATCTGCAGTACCATAAAGAGCCACCTCTGCAGAATAACAGCCTTTTACAGTCTCAGCAAGTTAGAGTTGTCTCAAAGGATAGAGAAAATAACTGGGATGGTGGGTTGAATGGTAGTATGAATGCTACTTGGATAGGGAATAAACTAAATGAGGGGCCTGGTAATTCAAATGATGCAACCATTTCTAATGGTAACAATGAACTTGTGAAGAGAGATGGGTGGGGTTCCTGTTCTTCTAGTTGGAGTACACCTGCAGATATCATGAATTCCAAGGAGGTAGAAATTGGAAGTTTTTCTCAGGGTTGGGACTCATTGAAAGGCAACACAGTTGTTCAAGTTAACAGTGGACATTCAGGTCAATCTCCCAAAGAAAACTGCAGACCTCTGTCCATAATCAGTTCTTCGAGATATTCTTCCCCTACTCCAATGAAACCATCTGTTGAGGAATGGGACTCCACTCTAGCATCTGTTTCTTCACTGAAACCGACTGAAGTAGCCTCTGATCATGCTGCTACTCCTACTTCAGAAAGTGTCCAGCTGACTCATTCTTCTCCACCCTATCCAACACCTAATGCATCTAGTTGGCAGCCAATTGATACTGGGCCCACTGAGATTAGCTCTGTAACTGAGGCATCGGTTTCAGATCTCTTGGCTGAAGTTGAAGCAATGGAGTCCCTTGATGGCCTGCCTTCCCCTACTTCAGTTATGAAATGCAGTGGGGAATTGACCCAGGGTTCTAAAAATGATTGTTTTAATTCTGTTGAGGGATTGAGCCCAACACCTGATCCAGCGAAAAATGATGCTTTGAGCTCCACTGGCGATTTCCAATTAACTTCTCAATCGACTATGAGTGCTGAACCTTGTGGGGCATCTCATACTGATGTTCTTGATCCTGATAAGAAGTCTGTGGGGCATTCCTCTTCTAATGATAAGGTGGAGGTGGAAAAGAAGCCCAGTGATGGTTCTGTCAACCAATGGGAGGCAGGTTCAGATATCCAGCCTCCTGCACCATCCACTGACCAGTGTCAGAAACTACAGATACTGGGAATGGCACAAGGAAATGCAAACGTGAATTGGGGCACTTCCACTGGGAACCTCGCTGTGTGGGGAGGACAATCTAAATACAGTGGGGGGAGATTTTCTGGTCCCAGAGACCGGGTTTTTCAGGTTGGGGATTCAGGTTTTGATAGGGGTAGAACTTCATTGAACAGGCAGTCAACATTTGGTGGAGCCGGAGGTGGAGGATTTTCTTCCAGGAATCCTCCCAAAGGGCAGCGAGTCTGTAAATTTTTCGAGAGCGGGCACTGCAAGAAGGGAGCATCATGTGATTATCTGCATCCATGA 4089 45.05 MEGGAKQQELPVSALYRPHLQQENPSFNSLQQTQALLCFNQCEPAHELDDSQLVGAPTVVAGHAEMDVKQDDPVAESETLTEVKVTDKNAGKRKRGRPPRGQAKPPPPKKKKDEEDVCFICFDGGDLVLCDRRGCPKAYHAACIKRDESFFRSRAKWNCGWHICSNCEKAAYYMCYTCTYSLCKGCIKDADILCVRGNKGFCTTCMRTVLLVEDNERGNKEMAQVDFDDKSSWEYLFKVYWIYLKGKLSLTLEELTRAKNPWKGAGLMARKGESSDELYDANDDKGSSSDSSSGHQEANTSKRRKTKKQPKFLNKDNSLNVGRSDDSKRTCLPEGTEWASKELLELVGHMKNGDTSVLSQFDVQALLLEYIKRNNLRDPRRKSQIICDMRLRNLFGKARVGHFEMLKLLESHFLIKEHSRADDIMRGGVVDTLASQVDADENNDYQLMIIKDKKRKTRKKGDERGPQTNLDEYAAIDVHNINLIYLRRILMENLIEDVETFQAKVVGSIVRIRISGSDQKQDMYRLVQVVGTSKVDVPYKIGKRTADVMLEILNLNKKEVISIDSISNQEFSEDECRRLRQSIKCGLVNRLTVGEIQEKAMALQAVRVNDWLETEILRLNHLRDRASEKGHRKEYPLVLYPNDTMEFLFNVFRMEAGAFNDLGRRRLFDFWRGFGRKHGAADEERRRAEFSVGGLGFRPRECVEKLQLLNTPEERQRRFRETPEKQDVIPRFSGLSKKGREPFSPRRGGDIPNDMGSRALKNLVTTNERGRNKCTTFLPEKEEGAAKAHEREKESSQNQGGDAYGSNCWEKPRNQVDPIGSVTGGCTNQAVVRSGLSSGVASETSTTTLSTGTVLSANNENDKIWHYQDPAGKIQGPFGMVQLRKWSANGFFPPHLRIWRMNEKQDDSILLTDAMNLQYHKEPPLQNNSLLQSQQVRVVSKDRENNWDGGLNGSMNATWIGNKLNEGPGNSNDATISNGNNELVKRDGWGSCSSSWSTPADIMNSKEVEIGSFSQGWDSLKGNTVVQVNSGHSGQSPKENCRPLSIISSSRYSSPTPMKPSVEEWDSTLASVSSLKPTEVASDHAATPTSESVQLTHSSPPYPTPNASSWQPIDTGPTEISSVTEASVSDLLAEVEAMESLDGLPSPTSVMKCSGELTQGSKNDCFNSVEGLSPTPDPAKNDALSSTGDFQLTSQSTMSAEPCGASHTDVLDPDKKSVGHSSSNDKVEVEKKPSDGSVNQWEAGSDIQPPAPSTDQCQKLQILGMAQGNANVNWGTSTGNLAVWGGQSKYSGGRFSGPRDRVFQVGDSGFDRGRTSLNRQSTFGGAGGGGFSSRNPPKGQRVCKFFESGHCKKGASCDYLHP* 1363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19524045 19544727 - Vvi4g1077 Vvi4g1077 785856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1179 1203 - -
Vvi4g1077 1362 SUPERFAMILY CCCH zinc finger 1337 1361 IPR036855 GO:0046872
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 778 810 - -
Vvi4g1077 1362 Gene3D - 864 921 IPR035445 -
Vvi4g1077 1362 ProSiteProfiles GYF domain profile. 862 916 IPR003169 GO:0005515
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1319 1339 - -
Vvi4g1077 1362 Pfam GYF domain 865 905 IPR003169 GO:0005515
Vvi4g1077 1362 SUPERFAMILY SWIB/MDM2 domain 337 414 IPR036885 -
Vvi4g1077 1362 SMART rtf1 475 585 IPR004343 GO:0003677
Vvi4g1077 1362 Gene3D - 476 605 IPR036128 GO:0003677
Vvi4g1077 1362 ProSiteProfiles Zinc finger C3H1-type profile. 1337 1362 IPR000571 GO:0046872
Vvi4g1077 1362 ProSitePatterns Zinc finger PHD-type signature. 118 178 IPR019786 -
Vvi4g1077 1362 Gene3D SWIB/MDM2 domain 326 422 IPR036885 -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1208 1235 - -
Vvi4g1077 1362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 208 IPR013083 -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 66 113 - -
Vvi4g1077 1362 CDD SWIB-MDM2_like 338 413 - -
Vvi4g1077 1362 SMART PHD_3 117 163 IPR001965 -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1238 1254 - -
Vvi4g1077 1362 ProSiteProfiles SWIB/MDM2 domain profile. 332 415 IPR003121 -
Vvi4g1077 1362 SUPERFAMILY Plus3-like 476 605 IPR036128 GO:0003677
Vvi4g1077 1362 ProSiteProfiles Plus3 domain profile. 475 608 IPR004343 GO:0003677
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1264 1362 - -
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 30 1040 - -
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1033 1253 - -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 66 89 - -
Vvi4g1077 1362 SUPERFAMILY GYF domain 851 917 IPR035445 -
Vvi4g1077 1362 ProSiteProfiles Zinc finger PHD-type profile. 115 181 IPR019787 -
Vvi4g1077 1362 SMART swib_2 327 418 IPR019835 -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 273 332 - -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1076 1117 - -
Vvi4g1077 1362 CDD PHD5_NSD 117 162 - -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 1164 1254 - -
Vvi4g1077 1362 SUPERFAMILY FYVE/PHD zinc finger 112 168 IPR011011 -
Vvi4g1077 1362 CDD GYF 862 919 IPR003169 GO:0005515
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1264 1362 - -
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1033 1253 - -
Vvi4g1077 1362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 30 1040 - -
Vvi4g1077 1362 Pfam SWIB/MDM2 domain 340 413 IPR003121 -
Vvi4g1077 1362 Pfam Plus-3 domain 480 583 IPR004343 GO:0003677
Vvi4g1077 1362 SMART gyf_5 863 918 IPR003169 GO:0005515
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 714 757 - -
Vvi4g1077 1362 MobiDBLite consensus disorder prediction 778 797 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1077 - - - vvi:100252322 1209.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g38 Vvi4g1077 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14700 PF03126 Plus-3 6.20E-21 No_clan Vvi TR