Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1079 ATGGCGATGATGATGCCGAAGCTGCTGTTGTTGATTTTTCTACTTGCAAGTGCAAGTTCAACGCTTAATGCAGATGGGTCTAATGAGTTGGTGATGACTGAAGAAGCCTACCGAAGTTGGGTAAAACGAGTGGGCTCTTTTAAGCACTCTGTCTTCCAGAAAGCAAAGAATAAGTTGAAGCCTTGCCTAACCATAAAAGTGGATAAAGACCAGAGCTTGGGTCATTTTGCCTCCGTGCAAAAGGCTGTTGATTCGCTTCCAGTCAACAATCCATGTCGGGTGGTTATCTCAATTGGTGCAGGGATTTACAGGGAGAAGGTGGTGATTCCTGCAATCAAGGCTTATGTCAGCCTGGAAGGTGCCGGTGCAGACAAGACCATTATTGAATGGAACGACACAGCAGACCTTGTAGGCCAGACTGGACGGCCGCTGGGCACCTTCGGTTCTGCAACATTTGCCGTTAATTCTCCTTACTTCATTGCAAAGAACATCACTTTCCAAAATAAAGCACCGCCACCACCATCAGGAGCTCTAGGAAAGCAAGCGGTGGCACTAAGAATCTCAGCAGATACAGCAGCCTTTATAGGCTGCAAGTTCATTGGAGCTCAAGATACACTATACGATCACATGGGCAGGCACTACTTCAGGGACTGCTACATCCAAGGCTCTGTGGATTTCATTTTCGGGAACGGCCTCTCCCTGTATGAGGGTTGCCATTTGCACGCTATCACCAACAGCGTGGGAGCCTTGACAGCTCAGAAGAGGGATGGCTTACTTGAGGAAACTGGCTTCTCCTTTGTTCATTGCAAAGTGACTGGTTCAGGTGCCCTATACTTGGGCAGGGCTTGGGGTACTTTCTCTAGGGTGGTTTTCGCTTTCACTTTTATGGACAAGATCATCAACCCTAGCGGATGGTATGCCTGGGGCAACAAAAGCAGGGAAATGACTGTATTTTACGGACAATACCAGTGTTCCGGGCCAGGGGCTGATTTTGGAAGAAGAGTTTCATGGTCAAGGGAGCTGACTCAACAGGAGGCCAAACCATTTATTTCAATTGGCTTTGTTGATGGCTATGAATGGCTTACAAACTTGTGA 1095 47.67 MAMMMPKLLLLIFLLASASSTLNADGSNELVMTEEAYRSWVKRVGSFKHSVFQKAKNKLKPCLTIKVDKDQSLGHFASVQKAVDSLPVNNPCRVVISIGAGIYREKVVIPAIKAYVSLEGAGADKTIIEWNDTADLVGQTGRPLGTFGSATFAVNSPYFIAKNITFQNKAPPPPSGALGKQAVALRISADTAAFIGCKFIGAQDTLYDHMGRHYFRDCYIQGSVDFIFGNGLSLYEGCHLHAITNSVGALTAQKRDGLLEETGFSFVHCKVTGSGALYLGRAWGTFSRVVFAFTFMDKIINPSGWYAWGNKSREMTVFYGQYQCSGPGADFGRRVSWSRELTQQEAKPFISIGFVDGYEWLTNL* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19585928 19587433 - Vvi4g1079 Vvi4g1079 785858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1079 364 Gene3D - 62 364 IPR012334 -
Vvi4g1079 364 SUPERFAMILY Pectin lyase-like 63 362 IPR011050 -
Vvi4g1079 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 362 - -
Vvi4g1079 364 Pfam Pectinesterase 67 357 IPR000070 GO:0030599|GO:0042545
Vvi4g1079 364 PANTHER PECTINESTERASE 28 362 - -
Vvi4g1079 364 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1079 K01051 - vvi:100854283 734.947