Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1082 ATGAGGCTGGTCCTCATTTTGACAACGTTTTCGTTGCTGTGCTTGGCCTCCAATGGCGCTATAACTTCTCGATTGCTTCAGCGCAATTCTCATAGCAGCAATTTCTTGACCACCGACGAACTCTGGTTCAATCAGACTGTCGATCACTTCTCCCCTTTGGATCACAGTAAGTTTCCGCAACGGTACTATGAATTCACTGACTACTTTCGACTTCCTGATGGACCGATTTTTTTAAAGATATGTGGAGAAGCTTCATGCGATGGGATACCCAATGATTATATCAGTGTTTTGGCAAAGAAATTTGGAGCAGCTGTGGTTTCTCTTGAGCATCGCTACTATGGAAAGAGTTCCCCCTTTCGGTCTCTGAGAACAGAAAATCTGAAATATCTTTCATCTAAGCAGGCACTTTTTGATTTGGCCGTTTTCCGTCAATATTATCAGGCAAAAGTGGTCCCAATAGGTGAATCCTTGAACGTAAAAGTCAATCGATCAAATGTTGAAAATCCATGGTTTGTTTTTGGTGTTTCGTATGCTGGTGCTCTTAGTGCATGGTTTCGTCTAAAGTTCCCACATTTAACATGTGGAAGTCTTGCCAGTTCTGCAGTTGTCCTTGCTATTTACAACTTTACTGAATTTGACCGTCAGATTGGAGAGTCAGCTGGTGCTGAATGTAAAGCTGTATTACAAGAAGTTAATGGACTTGTTGAACAGAGGCTTGCAGTTGATGGAAATGCTGTGAAGTCATTGTTTGGTGCTGCTAGTCTCAAGATTGATGCTGATTTCCTGTATCTTCTGGCAGATGCTGCAGTTACAGCATTTCAATATGGTAATCCAGATATGCTATGCTCCCCTCTTGTTCAAGCGAAAAAGGATGGAGAGGATCTGGAGAATGCGTATGCCACATATGTAAAAGAGTATTATCTTGGAACCTTTGGTGTCAGCATTGAAACTTATAATCAGCAGCATTTGAAAAGAACTAATTCCGCTGGGGATACATCTGATCGGTTGTGGTGGTTCCAAGTTTGCACTGAAGTTGCATTCTTCCAGGTGGCACCCTCAGATGATAGCATGCGCTCTTCAGAGATTAATACAAAGTACCATTTAGACCTATGCAAGAATGTCTTTGGCAATGGCATCTATCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATCCAAACTGACCTCAACCCCGGACATGCCTTCCTTCCTTATTTCTTGTCATAATTGTGGCCATGGAACTGATCTGCGAGGATGTCCCCAATCTCCTTTAAGCCCTGAAGGTGATGCCAAGAACTGTAGCTCTCCTGATGCAGTTCACAAAGTTAGGCAACAGATCATAGAACACATAGACCTGTGGCTGTCCCAGTGCCAGGCCACAGGTAGGAGTTATATGTGA 1464 42.96 MRLVLILTTFSLLCLASNGAITSRLLQRNSHSSNFLTTDELWFNQTVDHFSPLDHSKFPQRYYEFTDYFRLPDGPIFLKICGEASCDGIPNDYISVLAKKFGAAVVSLEHRYYGKSSPFRSLRTENLKYLSSKQALFDLAVFRQYYQAKVVPIGESLNVKVNRSNVENPWFVFGVSYAGALSAWFRLKFPHLTCGSLASSAVVLAIYNFTEFDRQIGESAGAECKAVLQEVNGLVEQRLAVDGNAVKSLFGAASLKIDADFLYLLADAAVTAFQYGNPDMLCSPLVQAKKDGEDLENAYATYVKEYYLGTFGVSIETYNQQHLKRTNSAGDTSDRLWWFQVCTEVAFFQVAPSDDSMRSSEINTKYHLDLCKNVFGNGIYPDVDATNIYYGGTKIAGSKIIFTNGSQDPWRHASKLTSTPDMPSFLISCHNCGHGTDLRGCPQSPLSPEGDAKNCSSPDAVHKVRQQIIEHIDLWLSQCQATGRSYM* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19607424 19615893 - Vvi4g1082 Vvi4g1082 785861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1082 487 Gene3D alpha/beta hydrolase 36 261 IPR029058 -
Vvi4g1082 487 Gene3D alpha/beta hydrolase 299 480 IPR029058 -
Vvi4g1082 487 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 6 482 - -
Vvi4g1082 487 PANTHER OS10G0511600 PROTEIN 6 482 - -
Vvi4g1082 487 Pfam Serine carboxypeptidase S28 45 428 IPR008758 GO:0006508|GO:0008236
Vvi4g1082 487 SUPERFAMILY alpha/beta-Hydrolases 75 477 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1082 - - - vri:117912515 967.607
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46