Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1083 ATGCGAACACTTTGTGACGTCTGTGAGAGCGCCGCTGCTATTCTCTTTTGCGCTGCCGATGAGGCTGCTCTGTGCCGAGTCTGCGACGAGAAGGTCCACATGTGTAATAAGCTTGCTAGCAGGCATGTGAGGGTAGGGCTTGCTGACCCCAGTGATGTTCCCCGGTGTGACATATGTGAAAATGCACCAGCATTCTTTTACTGTGAGATAGATGGAACTTCCCTTTGTTTGCAATGTGATATGATTGTACATGTTGGAGGTAAAAGAACTCATGGAAGATATCTCCTCTTGAGGCAGAGAGTTGAGTTTCCAGGAGATAAATCTGGGAATCTTGAGGACCCAGCCTTGCTACCAATGGAACCAGGTGAGAACAGGAGAGGACAAAATCAGTCATCTAAACCAACAGTGGTAGAAAACCAGCAAAATCGCAGAGTCTCTCCTGTTCCCACAATGGATGCTAATGCTGATGGGCATGCCAAAATGGACACTAAATTGATTGATTTGAATATGAAGCCACACCGAATACATGGACAAGCTTCAAACAATCAGCATTGA 555 46.13 MRTLCDVCESAAAILFCAADEAALCRVCDEKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKSGNLEDPALLPMEPGENRRGQNQSSKPTVVENQQNRRVSPVPTMDANADGHAKMDTKLIDLNMKPHRIHGQASNNQH* 185
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 19619114 19622397 - Vvi4g1083 Vvi4g1083 785862
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1083 184 CDD Bbox1_BBX-like 4 47 - -
Vvi4g1083 184 Gene3D Classic Zinc Finger 2 92 - -
Vvi4g1083 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Vvi4g1083 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Vvi4g1083 184 CDD Bbox1_BBX-like 56 96 - -
Vvi4g1083 184 MobiDBLite consensus disorder prediction 107 156 - -
Vvi4g1083 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vvi4g1083 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Vvi4g1083 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi4g1083 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vvi4g1083 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vvi4g1083 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vvi4g1083 184 MobiDBLite consensus disorder prediction 124 148 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Vvi3g45 Vvi4g1083 ECH
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14701 PF00643 zf-B_box 2.00E-06 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1083 - - vvi:100852825 387.882