Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi4g1083 | ATGCGAACACTTTGTGACGTCTGTGAGAGCGCCGCTGCTATTCTCTTTTGCGCTGCCGATGAGGCTGCTCTGTGCCGAGTCTGCGACGAGAAGGTCCACATGTGTAATAAGCTTGCTAGCAGGCATGTGAGGGTAGGGCTTGCTGACCCCAGTGATGTTCCCCGGTGTGACATATGTGAAAATGCACCAGCATTCTTTTACTGTGAGATAGATGGAACTTCCCTTTGTTTGCAATGTGATATGATTGTACATGTTGGAGGTAAAAGAACTCATGGAAGATATCTCCTCTTGAGGCAGAGAGTTGAGTTTCCAGGAGATAAATCTGGGAATCTTGAGGACCCAGCCTTGCTACCAATGGAACCAGGTGAGAACAGGAGAGGACAAAATCAGTCATCTAAACCAACAGTGGTAGAAAACCAGCAAAATCGCAGAGTCTCTCCTGTTCCCACAATGGATGCTAATGCTGATGGGCATGCCAAAATGGACACTAAATTGATTGATTTGAATATGAAGCCACACCGAATACATGGACAAGCTTCAAACAATCAGCATTGA | 555 | 46.13 | MRTLCDVCESAAAILFCAADEAALCRVCDEKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGRYLLLRQRVEFPGDKSGNLEDPALLPMEPGENRRGQNQSSKPTVVENQQNRRVSPVPTMDANADGHAKMDTKLIDLNMKPHRIHGQASNNQH* | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 19619114 | 19622397 | - | Vvi4g1083 | Vvi4g1083 | 785862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi4g1083 | 184 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Vvi4g1083 | 184 | Gene3D | Classic Zinc Finger | 2 | 92 | - | - | |
Vvi4g1083 | 184 | PANTHER | SALT TOLERANCE-LIKE PROTEIN | 1 | 183 | - | - | |
Vvi4g1083 | 184 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 183 | - | - | |
Vvi4g1083 | 184 | CDD | Bbox1_BBX-like | 56 | 96 | - | - | |
Vvi4g1083 | 184 | MobiDBLite | consensus disorder prediction | 107 | 156 | - | - | |
Vvi4g1083 | 184 | Pfam | B-box zinc finger | 3 | 42 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | Pfam | B-box zinc finger | 52 | 90 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 96 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
Vvi4g1083 | 184 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14701 | PF00643 | zf-B_box | 2.00E-06 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi4g1083 | - | - | vvi:100852825 | 387.882 |