Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1085 ATGGGGTCTGCTGGTGGTGAGGAGGTTATGCGAGGACCGAGCGGCCGTGGAGAGAGGGTTGTTGTGTCAGTTCGGCTGCGACCTTTGAATGAGAAGGAGATTTCAAGGAATGATGCATTGGACTGGGAATGCATCAATGACACCACTATAATATTCAAGAACCACCTTCCTATTCCAGAGAGATCAATGTACCCAAGTGCCTATACATTTGACAGAGTATTTAGGTCTGATTCCACTACGAGGGAGGTATATGAGGCAGGAGCCAAGGAAGTTGCTCTTTCGGTTGTCAGTGGTATTAATTCAAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAGGCACAAGGAAAGAGAATTTCTTTTGAAGTTCTCTGCTATGGAGATTTACAATGAATCTGTCAGAGACCTTCTCAGCTCAGATACTGCTCCGCTTCGACTTCTGGATGATCCAGAGAGAGGAACTATTGTTGAGAAACTCACTGAGGAAACTCTGAGAGACTGGAACCATCTAATAGAGCTCCTTTCCCTATGCGAAGCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTGACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTGAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCCTGGGAACTGTTATCCGTAAGCTAAGCAAAGGAAGAAGTGGACATATTCCTTATAGAGATTCAAAATTAACCCGCATATTGCAGTCCTCCTTAGGAGGCAATGCCAAAACTGCTATCATATGTACTATGAGTCCTGCAAGAAGCCATGTTGAGCAATCAAGAAACACCCTCTTGTTTGCGAGTTGTGCTAAGGAAGTGACTACCAATGCACAGGTTAACGTAGTCATGTCTGATAAAGCATTAGTGAAACACCTGCAGAGAGAATTGGCTAGACTGGAGAATTCATTGAGAAGTCCAGAACCAACTTCTATCTGTCTTGATACTGCCACATTACTGAGAGATAAAGACCTTCAGATTGAAAAGTTGGAGAAAGAGTTAAGAGAGCTGACTCTGCAACGAGATCTTGCTCAATCTCAAGTTGAGGATTTACTGGGAGTCGTTGGAGATGATAGACTTCCAATGATATGGGCAGATATGGATGATCACTACCCAAAATTAAGAGTGAGGAGATCATGGGAATCTGAAAATCCAACATCAGAGACATTTGCTTTGGCAGATGATCAAACACCAGCTTCTGGTCTCAGAACATTTGCTTTGGCAGATGATCAAACACCAGATGTTGGTCTCAGAACATGTGATACATCTCAGTACTCTGATGGAAACAGTGTGGATGATTCTGACGACCACTATCCACCACTTCCTGAATCTGAAGATAATTTTCTTCACAATGGTACATCTGCACTGGTGTCAGTTAATACCCCTAATCATGTTGCAATTGATCTGAGCTCACAGTGGGACAAGATTGAAGAACAGAGTAATGCAAACTCGGAGGATCTTTGCAAGGAAGTCAGATGTATTGAGATAGAGCATTCAATCATGAAAAGAGATATAGAATCTAATACATTGTCACCTGTAAGAGACACAGATGCCTTAGAATTGAAGGTGGTAAGGAATGGAGATGGAGCAAACCAGGAATTTACTTCACCCCTGTTGAAGGAGGATAAAGAGTTGAATTGCAACCAGCGTACTGTGGTCATTCCTTCTCCCCAAGAATTCTCACCATGGCTGCTGGAAAAGGAAAATTCTAGTTGTAGAAGCTTGAAGTTAACAAGGAGTAGAAGTTGTAAAGCAAGTTTCATGTATTGCTCGTCTTCACCCTGGTTTGAGAAGGAAGAAAAGGACAAGTACACACCATCCAATGTGTTTGAGAAAGACTTTATAGGAAGACCTGAGGGGTTCCAAAAGAAACTTGCTTCATTAAATTATGATACTGAAATTGACAAGCTATCAAGGAAAGGTGGTCAAACTTTCAGAGGGAGTTCCTCTGTAGATCAACTCAAAGAACAAGTTGTCACAACTTCAACTGATGAGGATGTTACCAGCCTCAACACTTATGTTGCAGGACTAAAGGAAATGGCCAAGTTTCAGTATGAGGAACGACTTGCTGATGATCAGGAGTCAGAACCAGAAGCCAACAAATCTGTAAAGAATGTAAAAGATGTTGGTTTGGATCCAATACAAGATGATTTGGCAAGTCCTTCAAGATGGCCTTTCGAATTCAAGAGACTCCAAAAAGAGATTATTGAACTCTGGCATTCTTGCAATGTGTCCTTGGTTCATAGAACGTACTTCTTCCTACTGTTTCAAGGGGATCCAGCAGATTCCATTTACATGGAGGTAGAGCTTAGAAGGCTATCCTTCCTCAAGGACACATTCTCTCGGGGTAATCAGACTGTAGTTGATGGTCACGCTCTCACCCCCGCCTCAAGCGTGAGAGCACTTCGTCGTGAGAGGGAGATGCTGTGTAAGCAAATGCAGAAAAAGCTATCAGAAGATGAGAGAATGAGCCTCTTCCTTAAGTGGGGTGTCCAGCTGAATGCAAAGAATAGGAGACTACAGTTAGCCTACCGCTTGTGGACTGACACAGAGGACATGAACCACATTTCAGAGAGTGCCAATATTGTTGCAAGGTTGACGCGGTTTGTACAGCCAGAGGAGGCCTTCAAGGAGATGTTTGGGCTCAACTTCACGCCCAGGCGCATGAGTAGGAGATCCCATAGTTGGAAACTTAACATTAAGCCATTCTTGTAA 2922 42.81 MGSAGGEEVMRGPSGRGERVVVSVRLRPLNEKEISRNDALDWECINDTTIIFKNHLPIPERSMYPSAYTFDRVFRSDSTTREVYEAGAKEVALSVVSGINSSIFAYGQTSSGKTFTMSGITEYTMADIYDHIERHKEREFLLKFSAMEIYNESVRDLLSSDTAPLRLLDDPERGTIVEKLTEETLRDWNHLIELLSLCEAQRQIGETALNETSSRSHQILRLTVESSAREFLGNDNSSVLTSTVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRSGHIPYRDSKLTRILQSSLGGNAKTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELARLENSLRSPEPTSICLDTATLLRDKDLQIEKLEKELRELTLQRDLAQSQVEDLLGVVGDDRLPMIWADMDDHYPKLRVRRSWESENPTSETFALADDQTPASGLRTFALADDQTPDVGLRTCDTSQYSDGNSVDDSDDHYPPLPESEDNFLHNGTSALVSVNTPNHVAIDLSSQWDKIEEQSNANSEDLCKEVRCIEIEHSIMKRDIESNTLSPVRDTDALELKVVRNGDGANQEFTSPLLKEDKELNCNQRTVVIPSPQEFSPWLLEKENSSCRSLKLTRSRSCKASFMYCSSSPWFEKEEKDKYTPSNVFEKDFIGRPEGFQKKLASLNYDTEIDKLSRKGGQTFRGSSSVDQLKEQVVTTSTDEDVTSLNTYVAGLKEMAKFQYEERLADDQESEPEANKSVKNVKDVGLDPIQDDLASPSRWPFEFKRLQKEIIELWHSCNVSLVHRTYFFLLFQGDPADSIYMEVELRRLSFLKDTFSRGNQTVVDGHALTPASSVRALRREREMLCKQMQKKLSEDERMSLFLKWGVQLNAKNRRLQLAYRLWTDTEDMNHISESANIVARLTRFVQPEEAFKEMFGLNFTPRRMSRRSHSWKLNIKPFL* 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19637856 19646091 + Vvi4g1085 Vvi4g1085 785864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1085 973 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi4g1085 973 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 SMART kinesin_4 17 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 Coils Coil 389 416 - -
Vvi4g1085 973 PANTHER KINESIN-LIKE PROTEIN KIN-7H 13 968 - -
Vvi4g1085 973 Coils Coil 868 888 - -
Vvi4g1085 973 CDD KISc_CENP_E 20 343 - -
Vvi4g1085 973 MobiDBLite consensus disorder prediction 492 511 - -
Vvi4g1085 973 Pfam Domain of unknown function (DUF3490) 796 956 IPR021881 -
Vvi4g1085 973 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1085 973 Gene3D Kinesin motor domain 14 374 IPR036961 -
Vvi4g1085 973 Coils Coil 352 372 - -
Vvi4g1085 973 PANTHER CENTROMERE PROTEIN E 13 968 - -
Vvi4g1085 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 374 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1085 K11498 CENPE; centromeric protein E - vvi:100854194 1898.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g46 Vvi4g1085 ECH
Vvi4g1085 Vvi18g1046 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40