Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1086 ATGCCATTGCTGCTATCCATGGCTGTGACACTAACTCCTCTTTTCTTCCTCATGCTTAGCTTCACCCCCTTCTTATCTTGCGCTCAACGGAGTGCTGAAACTCTGGCTGAGATTGAAGCGCTCACGGCTTTCAAACTCAATCTTCATGATCCGCTTGGAGTGTTGAACGGCTGGGATTCGTCAACGCCGTCTGCTCCATGCGACTGGCGTGGTGTGGGCTGCAGCAGTGGCCGAGTAAGCGACCTCCGCCTCCCTCGTCTACAACTAGGCGGTCGACTCACTGATCACCTTGTCTTCAATGTTGCCCAGAACCTTCTCTCCGGTGAAGTTCCTGGCGATCTTCCTCTGACTCTGCGATACCTGGATCTTTCATCCAACTTATTCTCTGGTCAAATTCCAGCGAGTTTTTCTGCCGCATCCGATCTTCAGCTCATCAACCTCTCGTACAACGACTTCTCCGGAGAGATTCCAGTGACCTTCGGCGCGCTTCAACAGCTTCAGTACCTCTGGCTTGATTACAATTTTTTGGACGGAACTCTACCTTCGGCGATCGCCAACTGCTCAGCCCTAATACATTTGAGTGTGGAGGGCAACGCGCTTCGGGGCGTAGTCCCGGTAGCGATTGCGTCTCTGCCGAAGCTTCAAGTGATTTCGCTTTCGCACAATAATCTCTCTGGTGCGGTCCCATCTTCTATGTTCTGCAACGTTTCTTCGCTTCGGATCGTTCAGCTAGGGTTTAATGCCTTCACGGACATTATTCCGGAGGAGTTGAGGAAGTGTAGTTATTTGCGTGTTCTTGATCTTGAAGGAAATCAATTTTCAGGGGCGGTTCCTGCGTTTTTGGGTGATCTGACAAGCTTGAAGACTTTGTCCCTTGGGGAGAATCTCTTCTCCGGTCTTATTCCACCGATTTTTGGTAAGCTCTCACAGCTAGAAACCTTGAACTTGAGGCACAACAATTTGTCCGGAACGATACCGGAGGAGCTATTGAGATTGAGTAACTTGACTACATTGGACCTAAGCTGGAACAAGCTTTCGGGTGAAATTCCAGCAAATATTGGGAATCTGAGTAAGCTACTTGTTCTGAATATTAGTGGTAACGCATATTCAGGGAAGATTCCTGCAACGGTGGGAAATTTATTCAAGCTAACGACCCTTGATTTGAGCAAGCAGAAACTTTCTGGTGAGGTGCCGGATGAGCTTTCAGGCTTGCCCAATTTGCAACTTATTGCTCTCCAGGAGAACATGTTATCTGGGGATGTTCCTGAAGGTTTCAGTAGCTTAGTGAGTCTGCGTTATTTGAACCTCAGTTCCAATTCCTTTTCCGGTCATATTCCAGCCACCTTTGGCTTTCTTCAGTCAGTGGTTGTTCTTTCATTGTCTGAAAATCTTATAGGTGGGTTGATTCCATCAGAGATAGGCAACTGCTCCGAGCTCAGAGTCCTTGAACTGGGATCAAATTCTTTGTCGGGTGACATTCCAGCTGATCTTTCTCGTCTCTCGCATCTGAATGAGCTTAATTTGGGTAGGAACAATTTAACAGGTGAAATCCCTGAAGAAATCTCAAAATGCTCGGCACTAACTTCTCTGTTGCTGGATACTAATCATCTTTCTGGTCACATTCCAAACTCATTGTCTAATTTGTCAAACCTAACAACACTGGATCTCTCTACAAACAACTTGACTGGGGAGATTCCGGCAAATCTTACACTGATCTCTGGCTTGGTAAACTTCAATGTCTCGCGAAATGATCTAGAAGGAGAGATTCCAGGACTACTGGAAATAAACACGGGTGGTAGGAGGAAGAGGCTGATTCTGTTATTTGCTGTGGCCGCAAGTGGAGCTTGCCTCATGGCATTATGCTGCTGCTTCTATATTTTCAGCCTCTTGAGGTGGCGCAAGAGGCTCAAAGAGGGGGCTGCGGGGGAGAAGAAAAGGAGCCCTGCGAGGGCAAGTTCAGGAGCCAGTGGGGGCCGTGGCAGTACTGATAATGGTGGACCAAAGCTTGTTATGTTCAATAACAACATCACACTTGCAGAAACAAGTGAAGCAACAAGGCAATTTGATGAGGAAAATGTGCTGAGCAGAACGCGATATGGTCTAGTTTTCAAGGCTTGCTACAATGATGGAATGGTTCTCTCAATTCGCCGACTCCCTGATGGACTGCTAGATGAAAACACATTCCGCAAAGAGGCTGAAGCACTAGGGAAAGTGAAACACCGTAACCTAACTGTCCTCCGCGGCTATTATGCTGGAGCATCTGATGTCAGACTCCTGGTTTACGATTACATGCCCAATGGAAACCTCGCAACCCTCCTACAAGAAGCATCCCACCAAGATGGTCATGTCCTCAATTGGCCAATGCGCCACCTTATTGCACTTGGAATCGCTCGGGGCTTAGCATTTTTACACACAGCTTCCATGGTTCATGGCGATGTCAAGCCACAAAACGTCCTATTTGACGCGGATTTTGAAGCCCATTTATCAGATTTCGGTCTCGACCGGCTGACAATTGCTGCCCCAGCGGAAGCTTCCACTTCCTCCACATCTGTTGGCACGCTAGGGTATGTCTCCCCGGAAGCAGTCCTAACAGGGGAAACCACAAAGGAATCAGATGTTTACAGCTTCGGCATTGTCTTGCTGGAACTTTTGACCGGAAAAAGACCTGTGATGTTTACACAAGACGAAGACATAGTGAAGTGGGTCAAGAGACAATTGCAAAGGGGTCAAGTCTCAGAACTGCTTGAGCCAGGACTCCTAGAACTCGATCCCGAATCATCAGAATGGGAAGAGTTCTTGCTGGGAGTGAAAGTGGGTTTGCTTTGCACCGCACCAGACCCTCTCGACCGACCCACCATGGCGGACACAGTGTTCATGCTAGAAGGTTGCCGTGTCGGACCCGATATTCCGTCGGGGGAGGGGATGAGGTTTGAGTAA 2937 48.28 MPLLLSMAVTLTPLFFLMLSFTPFLSCAQRSAETLAEIEALTAFKLNLHDPLGVLNGWDSSTPSAPCDWRGVGCSSGRVSDLRLPRLQLGGRLTDHLVFNVAQNLLSGEVPGDLPLTLRYLDLSSNLFSGQIPASFSAASDLQLINLSYNDFSGEIPVTFGALQQLQYLWLDYNFLDGTLPSAIANCSALIHLSVEGNALRGVVPVAIASLPKLQVISLSHNNLSGAVPSSMFCNVSSLRIVQLGFNAFTDIIPEELRKCSYLRVLDLEGNQFSGAVPAFLGDLTSLKTLSLGENLFSGLIPPIFGKLSQLETLNLRHNNLSGTIPEELLRLSNLTTLDLSWNKLSGEIPANIGNLSKLLVLNISGNAYSGKIPATVGNLFKLTTLDLSKQKLSGEVPDELSGLPNLQLIALQENMLSGDVPEGFSSLVSLRYLNLSSNSFSGHIPATFGFLQSVVVLSLSENLIGGLIPSEIGNCSELRVLELGSNSLSGDIPADLSRLSHLNELNLGRNNLTGEIPEEISKCSALTSLLLDTNHLSGHIPNSLSNLSNLTTLDLSTNNLTGEIPANLTLISGLVNFNVSRNDLEGEIPGLLEINTGGRRKRLILLFAVAASGACLMALCCCFYIFSLLRWRKRLKEGAAGEKKRSPARASSGASGGRGSTDNGGPKLVMFNNNITLAETSEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGLLDENTFRKEAEALGKVKHRNLTVLRGYYAGASDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHTASMVHGDVKPQNVLFDADFEAHLSDFGLDRLTIAAPAEASTSSTSVGTLGYVSPEAVLTGETTKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKRQLQRGQVSELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMADTVFMLEGCRVGPDIPSGEGMRFE* 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19652827 19656380 + Vvi4g1086 Vvi4g1086 785865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1086 978 Gene3D Transferase(Phosphotransferase) domain 1 764 967 - -
Vvi4g1086 978 Pfam Leucine rich repeat 382 440 IPR001611 GO:0005515
Vvi4g1086 978 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Vvi4g1086 978 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Vvi4g1086 978 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Vvi4g1086 978 SMART serkin_6 688 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1086 978 Gene3D Ribonuclease Inhibitor 35 194 IPR032675 -
Vvi4g1086 978 ProSiteProfiles Leucine-rich repeat profile. 310 331 IPR001611 GO:0005515
Vvi4g1086 978 SUPERFAMILY Protein kinase-like (PK-like) 669 966 IPR011009 -
Vvi4g1086 978 Pfam Protein kinase domain 698 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1086 978 ProSiteProfiles Protein kinase domain profile. 688 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g1086 978 SUPERFAMILY L domain-like 445 591 - -
Vvi4g1086 978 Gene3D Ribonuclease Inhibitor 301 398 IPR032675 -
Vvi4g1086 978 Gene3D Ribonuclease Inhibitor 195 300 IPR032675 -
Vvi4g1086 978 SMART LRR_typ_2 211 235 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 284 307 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 308 331 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 428 451 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 500 524 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 332 356 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 163 187 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 236 259 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 404 427 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 452 476 IPR003591 -
Vvi4g1086 978 SMART LRR_typ_2 548 572 IPR003591 -
Vvi4g1086 978 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515
Vvi4g1086 978 Gene3D Ribonuclease Inhibitor 399 598 IPR032675 -
Vvi4g1086 978 SMART LRR_sd22_2 548 577 - -
Vvi4g1086 978 SMART LRR_sd22_2 332 358 - -
Vvi4g1086 978 SMART LRR_sd22_2 211 238 - -
Vvi4g1086 978 SMART LRR_sd22_2 163 189 - -
Vvi4g1086 978 MobiDBLite consensus disorder prediction 641 668 - -
Vvi4g1086 978 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 235 972 - -
Vvi4g1086 978 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 130 237 - -
Vvi4g1086 978 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 12 135 - -
Vvi4g1086 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Vvi4g1086 978 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vvi4g1086 978 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Vvi4g1086 978 PRINTS Leucine-rich repeat signature 335 348 - -
Vvi4g1086 978 PRINTS Leucine-rich repeat signature 548 561 - -
Vvi4g1086 978 ProSiteProfiles Leucine-rich repeat profile. 550 572 IPR001611 GO:0005515
Vvi4g1086 978 SUPERFAMILY L domain-like 232 491 - -
Vvi4g1086 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 135 - -
Vvi4g1086 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 235 972 - -
Vvi4g1086 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 130 237 - -
Vvi4g1086 978 SUPERFAMILY L domain-like 59 298 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76589 PF00069 Pkinase 5.80E-34 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1086 - - vvi:100854147 1403.27