Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1091 ATGTCCACCGAAGGTGTCGCTGTCGAGCAACCGGAGCAGGAAGTGGTTGTGACGGAGCAGGCGGTAGCTCTGGAGATGCCAGCCCCGGAGAAGAAGCCAAAGGCTCGTAAGGAGAAGAAGCCCAAACAGGCCAGAGCTTCTTCTCATCCTCCTTACTTCCAGATGATCAAGGAGGCTCTTTTGGCTCTGGACGAGAAAAGTGGCTCCAGTCCGTACGCTATTGCCAAGCACATGGAAGAGAAGCACAAGGCAGTCCTCCCGGCGAATTTTAGGAAAATCCTGAGTCTTCAGTTGAAGAACTCCGTAGCGAAGGGAAATCTCATCAAGATCAAGGCTTCCTACAAGCTTTCCGGAGTAAGAAAAGGAACGGCAAAGTCCGATGGAGCGAAGAGAGCGAAGGCCACCTCTGATCCTAAGAAAAAGTCGGTGAAGAAATCAGAGACTCCAAAGAAAGTTGCGGCCAACAAGGCTAGGAAAACCGTGCCATCAAAGGTGAAGCAACCCAGGTCCATTAGATCTTCTGCTAAGAAGGCTAAGAAGGTCACAACCTGA 552 51.09 MSTEGVAVEQPEQEVVVTEQAVALEMPAPEKKPKARKEKKPKQARASSHPPYFQMIKEALLALDEKSGSSPYAIAKHMEEKHKAVLPANFRKILSLQLKNSVAKGNLIKIKASYKLSGVRKGTAKSDGAKRAKATSDPKKKSVKKSETPKKVAANKARKTVPSKVKQPRSIRSSAKKAKKVTT* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19696476 19697718 - Vvi4g1091 Vvi4g1091 785870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1091 183 SUPERFAMILY Winged helix DNA-binding domain 46 121 IPR036390 -
Vvi4g1091 183 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1091 183 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1091 183 PRINTS Histone H5 signature 138 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1091 183 PRINTS Histone H5 signature 170 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vvi4g1091 183 Gene3D - 43 135 IPR036388 -
Vvi4g1091 183 PANTHER HISTONE H1 6 181 - -
Vvi4g1091 183 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1091 183 PANTHER HISTONE H1 6 181 - -
Vvi4g1091 183 MobiDBLite consensus disorder prediction 21 51 - -
Vvi4g1091 183 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1091 183 MobiDBLite consensus disorder prediction 162 183 - -
Vvi4g1091 183 MobiDBLite consensus disorder prediction 124 154 - -
Vvi4g1091 183 CDD H15 46 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1091 183 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi4g1091 183 MobiDBLite consensus disorder prediction 119 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1091 K11275 H1_5; histone H1/5 - vvi:100254064 261.151
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1091 Blo04g00891 . . . . . . . . . Cma03g00698 . Car03g00642 . Sed08g1603 . Cpe10g00652 Bhi03g00883 Tan03g2056 Cmetu04g0515 . Hepe04g1578 . . Cla01g01965 Cam01g2057 Cec04g1715 Cco04g1780 Clacu01g2078 Cmu01g1955 Cre04g1629 Cone8ag0839 Cone12ag0726 . . Lsi01g00617 . . Cme08g00912 . . . . . . Bma03g00967 . . Cmo03g00725 . . . . . . . . . . . . . . . . . . . . . . Csa06g03310 Chy02g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012514 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29