Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1092 ATGAGAACTAGAAATGCCGAAACCCCCAAACCGGCGTCCAAAAAGAAGACGCCGCAGGCTAAGAAATCTGCCGGCAAGGCTCCTCAGACCACGCCCGAAACGGGGGCAGGATCGGTGACGCCGAAATCAACCGAGACGAAGCGTGTCTCTGCAACCAAAGGGAAGCAGGTGAAGACCAACGAAACTACACCGACATCGACACAGAACGCGGCTGCTGAATTGAACACTGGAGCATCAGTTGAAGAGGTGAAAACTGCAGCTAATGTGTCTCTAATAACACCAGAGACGAAAGCAGCTTCAGGTGCCAAATCAGTGGTGAAGAAAACGCCGGGAAAAGCTAGAACTCCTCCTTCAGTAAAAGCTGTTTCTGCGAAGACACCTGCATTGGGGGAGTCTTTAAAACCAAAGGTCGAGGAGCCCGTGAAGAAGGAAGGGGTTGATGCTGCAAAGGAGGGGGAGTCTACAGAGAAGGAAGGGACTGAGTCTGCAAAGAAGGAAGGACCTGTTGTTAAAAACGTTGAAGATTCCAACAAGAAGGAAACAAGTTCTGGTCATCCAGAAGGCGTTCCTACCGAGAATCCTAGAGATACTTCGGAGCATGAAGAAATTGTTGCCTTGAATGTTGCAAAATCTCCAGATAATGGAGAAATCAGTATTGCCAAGGAAGTGCCGGATGTGAATGAAGAATTGGGAGAGGAGATAAAACATGTTGAGGATAAAGAAGAGACTAAGAATGAGCAAGTTAACATGGAAGCAGAAACAAATGAGGCTAGAGTTGGAGAAGATGCCCCAGTGAAGGAGGATAAGTACTATGGTGATGAGGTAATGGACTATGGAGATGAAGAGGGACTTGAAGAACCTGAGGAAGAACTTCCAGTAAGTGATGCAGTGGATCCTGGAGAAGAAACAGAGGCCTTGGAGGAAGAACACAGAGAACTGACTGCTATTGCAAAGGAGCGGAAGATATCAAAAGCACACGAGATATTTGTTGGTGGATTGGATAGGGATGCTGAGGAGGAGGATGTAAAAAAGGTCTTTGAGAGGATTGGAGAGGTAGTCGAAGTTCGATTGCACAAGAATTTGTCATCTAATAAAAATAAGGGTTATGCATTTGTAAAGTTTGCTAATAAGGAGCATGCAAGCCGGGCTTTGTCAGAAATGAAAAACCCCGTTATTTGTGGGAAGCGATGTGGAACTGCACCCAGTGAGGACAATAACACATTGTTCTTAGGCAATATTTGCAACACATGGACGAAGGAAGCAATCAAACAAAAATTGAAAGACTATGGCATTGAAGGTGTTGGGAACATCACTCTTGTCCCAAATCCTCAACATGAAGGATTGAGTCGTGGTTTTGCTTTCCTTGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAGAAACCAGATGTTATATTTGGCCATGCTGAGCGAACTGCAAAAGTAGCTTTTGCAGAACCTTTACGTGAGCCAGACCCGGAGATCATGGCACAGGTTAAGTCTGTATTTGTTGATGGCCTCCCTCCTCACTGGGATGAAGACCGTGTTAGAGAGCAATTTAAAGGCTATGGGGAGATTGAACGAATTGTGCTTGCACGTAATATGTCGACTGCCAAGAGGAAGGATTTTGGTTTTGTTGATTTCACTACTCATGAGGCTGCTCTTTCTTGCATTGATAGTGTAAACAACACAGAATTGTGTGATGGGAACTCAAAGACAAAAGTGAAAGTCAGGCTTTCAAACCCTTTGCCCAAAACTCAGGCTGTGAAGGGGGGATTGTGTGGTGGATTTCGGATTGGTCATGGTGGTGTTGGATCTTCCTCAAAGTTTGGAAGGGGGGGTTTTGGACGGGGAGGACATCACTTCAACCGAGCACAATTTCAACGTGACAGGGGTTTCTATCAACGTGAATATGGTCCAACTGGTAGATTGGGGTTCCCCAATGCACCTGATTTTGATGGTCCATACCCTGAGTTCCATGAGAGACACTTTTTTGGAAGAGGAGGACGAAGGGGTTCTTTGAGGGGTGCTTATCAGGGATCTGGGGGAGGCTATCCAGCTGCTGTCCCACCAAGACCAAATCTTGATAGGCCCAGGCATGGTGCAATTGATAGGGGTCATGGGAAGTACTTCCCATTTAGGCAACAACCATTTTTCCCTGAAGAAGACTTTGACAACTCTTTTTCTGGGAGGCATTTTGATGACCCTTATCTTTATGAGGACAATGCACGTGGGATAAAACGACCATTTATACCAGACTGGGACCCTGGTTACATGGAACCAAGCAGGTTTCGCCCTCGACTGGATTACTCTGACCCAGAGGTTGATTTTCATGGATCTCGTTATCGGGATAATTTTGAAGCTGGCAGTAGTCTCTACTCACAAGATTATTATGGTCCTGATTATGATAGAGGTGCATATCCTTCCTATTACAGAGATGATCGGTCATATCGAGGCGGTTATTATTATTAA 2484 45.61 MRTRNAETPKPASKKKTPQAKKSAGKAPQTTPETGAGSVTPKSTETKRVSATKGKQVKTNETTPTSTQNAAAELNTGASVEEVKTAANVSLITPETKAASGAKSVVKKTPGKARTPPSVKAVSAKTPALGESLKPKVEEPVKKEGVDAAKEGESTEKEGTESAKKEGPVVKNVEDSNKKETSSGHPEGVPTENPRDTSEHEEIVALNVAKSPDNGEISIAKEVPDVNEELGEEIKHVEDKEETKNEQVNMEAETNEARVGEDAPVKEDKYYGDEVMDYGDEEGLEEPEEELPVSDAVDPGEETEALEEEHRELTAIAKERKISKAHEIFVGGLDRDAEEEDVKKVFERIGEVVEVRLHKNLSSNKNKGYAFVKFANKEHASRALSEMKNPVICGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIEGVGNITLVPNPQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPLREPDPEIMAQVKSVFVDGLPPHWDEDRVREQFKGYGEIERIVLARNMSTAKRKDFGFVDFTTHEAALSCIDSVNNTELCDGNSKTKVKVRLSNPLPKTQAVKGGLCGGFRIGHGGVGSSSKFGRGGFGRGGHHFNRAQFQRDRGFYQREYGPTGRLGFPNAPDFDGPYPEFHERHFFGRGGRRGSLRGAYQGSGGGYPAAVPPRPNLDRPRHGAIDRGHGKYFPFRQQPFFPEEDFDNSFSGRHFDDPYLYEDNARGIKRPFIPDWDPGYMEPSRFRPRLDYSDPEVDFHGSRYRDNFEAGSSLYSQDYYGPDYDRGAYPSYYRDDRSYRGGYYY* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19714346 19719359 - Vvi4g1092 Vvi4g1092 785871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1092 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 406 491 IPR000504 GO:0003723
Vvi4g1092 827 PANTHER NUCLEOLIN-LIKE ISOFORM X1 249 820 - -
Vvi4g1092 827 MobiDBLite consensus disorder prediction 55 75 - -
Vvi4g1092 827 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 249 820 - -
Vvi4g1092 827 Coils Coil 227 247 - -
Vvi4g1092 827 CDD RRM_SF 506 582 - -
Vvi4g1092 827 MobiDBLite consensus disorder prediction 94 272 - -
Vvi4g1092 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 404 IPR000504 GO:0003723
Vvi4g1092 827 MobiDBLite consensus disorder prediction 222 272 - -
Vvi4g1092 827 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 586 IPR000504 GO:0003723
Vvi4g1092 827 MobiDBLite consensus disorder prediction 23 47 - -
Vvi4g1092 827 SMART rrm1_1 327 400 IPR000504 GO:0003723
Vvi4g1092 827 SMART rrm1_1 407 484 IPR000504 GO:0003723
Vvi4g1092 827 SMART rrm1_1 505 580 IPR000504 GO:0003723
Vvi4g1092 827 CDD RRM_SF 408 471 - -
Vvi4g1092 827 SUPERFAMILY RNA-binding domain, RBD 327 471 IPR035979 GO:0003676
Vvi4g1092 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 571 IPR000504 GO:0003723
Vvi4g1092 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 408 476 IPR000504 GO:0003723
Vvi4g1092 827 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 396 IPR000504 GO:0003723
Vvi4g1092 827 SUPERFAMILY RNA-binding domain, RBD 495 617 IPR035979 GO:0003676
Vvi4g1092 827 CDD RRM_SF 328 396 - -
Vvi4g1092 827 MobiDBLite consensus disorder prediction 1 76 - -
Vvi4g1092 827 MobiDBLite consensus disorder prediction 135 182 - -
Vvi4g1092 827 Gene3D - 493 643 IPR012677 -
Vvi4g1092 827 Gene3D - 297 402 IPR012677 -
Vvi4g1092 827 Gene3D - 405 490 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1092 - - - vvi:100259067 1541.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1092 . . Bda04g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1674 Cone9ag1595 . . . . Blo05g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017281 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 6