Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1094 ATGGCGTCCGAAAAAGAGACGGCTGGGTCCGGATCTGCCGCGGCAATCAACGGCGGCGAAGCCCTAGAACCACCGAAGCGGAAGATAGCTCTGATCACCGGCATAACGGGGCAGGATGGGTCGTATCTAACGGAGTTTCTCCTGAACAAGGGGTACGAAGTCCACGGTCTGATCCGACGATCTTCCAATTTCAATACCCAACGCCTCAATCACATCTACATCGATCCTCACAACTCCCATAAAGCTCGAATGAAGCTCCACTACGCCGACCTCTCCGACGCCTCCTCCCTACGCCGCTGGATCGACACCATCGCCCCCGACGAGGTCTACAACCTTGCTGCCCAGTCCCACGTCGCCGTTTCCTTCGAGATCCCGGATTACACCGCCGATGTGGTGGCCACGGGCGCCCTCCGCCTCCTCGAAGCCGTCCGATCCCACATCATGGCCACCGGCCGATCTCACATTCGGTACTACCAAGCCGGATCCTCGGAGATGTTCGGATCCACTTCGCCTCCCCAATCGGAAACCTCTCCATTTCACCCCCGATCCCCTTACGCGGCCTCTAAATATTGGGTTGCAGAGCAAACTGTTCATGGGGAATTTGCAGGCTTCGAGAGATTGGGGTTTCGCGGGGGATTATGTGGAAGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGACGATTACGTGGTGGCGACGGAGGAGTTGATAACCTTAAGGGTGATTCTAGCAAAGCAAGGAAGGTGCTTGGTTGGAAGCCTAAGGTGGATTTTGAGCAGTTGGTGAAGATGATGGTTGATGAGGATATTGAATTGGCTAAGAGGGAGAAGGTGCTTGTGGACGCGGGCTATATGGACGCACAGCAGCAGCCTTGA 876 56.05 MASEKETAGSGSAAAINGGEALEPPKRKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRLNHIYIDPHNSHKARMKLHYADLSDASSLRRWIDTIAPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIMATGRSHIRYYQAGSSEMFGSTSPPQSETSPFHPRSPYAASKYWVAEQTVHGEFAGFERLGFRGGLCGSDVDDAAAGEAGRLRGGDGGVDNLKGDSSKARKVLGWKPKVDFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19724026 19725390 - Vvi4g1094 Vvi4g1094 785873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1094 291 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 235 286 IPR006368 GO:0008446|GO:0019673
Vvi4g1094 291 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 14 192 IPR006368 GO:0008446|GO:0019673
Vvi4g1094 291 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 235 286 - -
Vvi4g1094 291 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 14 192 - -
Vvi4g1094 291 Gene3D - 31 191 - -
Vvi4g1094 291 Pfam GDP-mannose 4,6 dehydratase 31 193 IPR016040 -
Vvi4g1094 291 Pfam GDP-mannose 4,6 dehydratase 234 265 IPR016040 -
Vvi4g1094 291 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 271 IPR036291 -
Vvi4g1094 291 Gene3D - 235 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1094 K01711 gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47] - vvi:100264358 372.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1094 Blo04g00890 Blo16g00075 . . Bpe15g00467 Bpe13g00422 . Bma15g00952 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1676 Cone9ag1597 . . . . . . Bda11g01842 . Bpe10g00148 . Bma03g00966 Bma06g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004288 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 43