Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1096 ATGTCGTCGAATCAGGTGAGGGCTTCGCACATCTTGATCAAGCACCAAGATTCCAGAAGGAAGGCGTCTTGGAGAGATCCTGAAGGTCGAGTCATAAAGGCCACCACCAAAGAAAGTGCCGTCACTCAGATTAAGGCCATTCGCGACGACATCATTTCTGGCAAATCTAAGTTCTCCGACGTCGCTTCTCAAATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGATCTCGGGCCATTTGGTCGGGGTCAGATGCAAAAGCCTTTTGAAGAAGCAACATATGCTCTTAAAGTTGGGGAGATTAGCGACATCGTGGAAACTGATAGTGGGGTTCACATCATAATGAGGACTGGTTGA 357 49.86 MSSNQVRASHILIKHQDSRRKASWRDPEGRVIKATTKESAVTQIKAIRDDIISGKSKFSDVASQISDCSSAKRGGDLGPFGRGQMQKPFEEATYALKVGEISDIVETDSGVHIIMRTG* 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19742617 19746072 - Vvi4g1096 Vvi4g1096 785875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1096 118 SUPERFAMILY FKBP-like 3 117 - -
Vvi4g1096 118 MobiDBLite consensus disorder prediction 12 28 - -
Vvi4g1096 118 Pfam PPIC-type PPIASE domain 10 117 IPR000297 GO:0003755
Vvi4g1096 118 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 3 118 IPR000297 GO:0003755
Vvi4g1096 118 Gene3D - 1 118 IPR046357 GO:0003755
Vvi4g1096 118 ProSitePatterns PpiC-type peptidyl-prolyl cis-trans isomerase signature. 58 78 IPR023058 -
Vvi4g1096 118 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 4 118 - -
Vvi4g1096 118 MobiDBLite consensus disorder prediction 1 28 - -
Vvi4g1096 118 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1096 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] - vvi:100242075 233.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1096 . . Bda04g00026 . . . Bma09g00103 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0840 . . . . . . . Blo05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008577 1 1 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35