Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g11 ATGGCATGTTCAGTTGCTGCTGATGCCTCAGTTTCTGCAAATACAGCTGTGCCCAACTCCTCCCAGAAAAGAATTGAACATGCTCCAGTGGTTGGGTGGCCTCCAATCCGTTCATTCAGGAAGAATCTTGTGAATAGCAGCTCCTCAAAGCCTGAATCAGAGTCACCAAACAAAATTCCTGAGGAGACCGGCTATGGAAAATCTGAAAGTTCCAAAACTGGATTGTTTGTAAAGATTAACATGGATGGTGTCCCAATTGGAAGAAAAGTGGATCTCAAAGCCTGTGACAGCTATGAAAAACTCTCATATGCTGTAGATGATCTCTTCAGAGGTCTTCTTTCAGCTCAAAATGAATCATCTGCTGGCACTGGAAATGAAAACAAGATGGAGGAAGCAAAAACCATGGCAGGATTATTCGATGGAAGTGGTGAATATACTCTAGTTTATGAGGATAATGAAGGAGACAGAATGCTTGTTGGAGATGTCCCATGGCACATGTTTGTATCTACAGTGAGGAGATTGCGCGTGTTGAAGAGCTCTGAACTTGCCATCCTCTGTGTGAGTAGCAGCAAGCAAGAGAAGCCACCCCCTGGTTCTGCAGTTGAATTTGGAAAATGA 618 43.85 MACSVAADASVSANTAVPNSSQKRIEHAPVVGWPPIRSFRKNLVNSSSSKPESESPNKIPEETGYGKSESSKTGLFVKINMDGVPIGRKVDLKACDSYEKLSYAVDDLFRGLLSAQNESSAGTGNENKMEEAKTMAGLFDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVRRLRVLKSSELAILCVSSSKQEKPPPGSAVEFGK* 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 162910 165161 + Vvi4g11 Vvi4g11 784790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g11 205 SUPERFAMILY CAD & PB1 domains 69 176 - -
Vvi4g11 205 Gene3D - 68 191 - -
Vvi4g11 205 MobiDBLite consensus disorder prediction 42 69 - -
Vvi4g11 205 ProSiteProfiles PB1 domain profile. 74 189 IPR000270 GO:0005515
Vvi4g11 205 Pfam AUX/IAA family 13 185 IPR033389 -
Vvi4g11 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 3 192 - -
Vvi4g11 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 192 IPR003311 GO:0005634|GO:0006355
Vvi4g11 205 MobiDBLite consensus disorder prediction 8 22 - -
Vvi4g11 205 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g11 K14484 IAA; auxin-responsive protein IAA - vvi:100247345 392.119
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g11 Vvi9g273 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003783 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14703 PF02309 AUX_IAA 4.60E-69 CL0072 Vvi TR