Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1104 ATGGGCGAAGGCAGAGAGGGAGATTGGGAGTGCAGCGGATGCAGAAACAGAAACTACGCCTTCAGATCCTTCTGCAACCGATGCAAGCAGCCTCGCCTCCTCGTCGACACCAAAACCCCCGCCGATTCCAAATGGCTTCCTCGCATCGGAGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCGTCACGAGAAAAGTGCAAAAAGTGCGGACAACCAAAGGAGATAGCAGCAATGCCAGCGATTGCAATGCCTGGAGCTTCTCTCCCAACTTATGCGCATTATTTTGCCAGGGCGCAAGGAGGACCCGAACAAAAGATGAACATTGGATTAATGAGCAACGGTGCTCTTCAGCAGCCACTTCCTTTGAGCTCGACCTGGTCTGTAGGAGGTCCTGATAAATATGGAGGCCAACCAGCTCCAACATGGCCCCTAGGTGGAAACCCTAGCCCTGCACTTCCATTTCCAAACCATGCAAATCAGCTCCTTATGGTTCCTAAAGGATGGCGCAATGGTGACTGGATATGCAACTGTGGCTTCCATAATTATTCTTCTCGTGCACAGTGCAAAAAATGCAATGCTTCAATGCCACCAGCACTTGGAATGAAGAGATTAGCATCAGAAGAGTTTGTTCGTGACTGGGATAGCAAGAGATTGAATGCCGGACATGCAAATGGACAGCAGCCATCATACCCAGGATTTGAGCAACTGGCAGGTTCCAGTGTTGATCCAAAAGGTGTGGCTTATGCCCCCTATCCTAGTGTAACCCCAGTGGCACCTCCAAATTTGCAAGTGCCAATGCAGTTCCCACATCAAACAACAACACCTACACTCCTTGGGAAAGGAGCAAAGCAATGGCGTGATGGGGACTGGATGTGCACAAATTGCAACAATCATAATTTTGCATCTCGATCCCAGTGCAATAGGTGTAAAACTCAAAGAGACGCCCTCGCGCAGCCTGTCAGCGTTGCATAG 978 49.69 MGEGREGDWECSGCRNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEIAAMPAIAMPGASLPTYAHYFARAQGGPEQKMNIGLMSNGALQQPLPLSSTWSVGGPDKYGGQPAPTWPLGGNPSPALPFPNHANQLLMVPKGWRNGDWICNCGFHNYSSRAQCKKCNASMPPALGMKRLASEEFVRDWDSKRLNAGHANGQQPSYPGFEQLAGSSVDPKGVAYAPYPSVTPVAPPNLQVPMQFPHQTTTPTLLGKGAKQWRDGDWMCTNCNNHNFASRSQCNRCKTQRDALAQPVSVA* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19822101 19827502 + Vvi4g1104 Vvi4g1104 785883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1104 325 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Vvi4g1104 325 SUPERFAMILY Ran binding protein zinc finger-like 282 316 IPR036443 -
Vvi4g1104 325 ProSiteProfiles Zinc finger RanBP2 type profile. 171 199 IPR001876 -
Vvi4g1104 325 PANTHER OS04G0110600 PROTEIN 273 325 - -
Vvi4g1104 325 PANTHER OS04G0110600 PROTEIN 168 226 - -
Vvi4g1104 325 PANTHER OS04G0110600 PROTEIN 3 138 - -
Vvi4g1104 325 SMART zf_4 7 31 IPR001876 -
Vvi4g1104 325 SMART zf_4 50 74 IPR001876 -
Vvi4g1104 325 SMART zf_4 173 196 IPR001876 -
Vvi4g1104 325 SMART zf_4 290 314 IPR001876 -
Vvi4g1104 325 ProSiteProfiles Zinc finger RanBP2 type profile. 288 317 IPR001876 -
Vvi4g1104 325 ProSitePatterns Zinc finger RanBP2-type signature. 292 311 IPR001876 -
Vvi4g1104 325 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Vvi4g1104 325 SUPERFAMILY Ran binding protein zinc finger-like 169 196 IPR036443 -
Vvi4g1104 325 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Vvi4g1104 325 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Vvi4g1104 325 PANTHER ZINC FINGER PROTEIN 273 325 - -
Vvi4g1104 325 PANTHER ZINC FINGER PROTEIN 3 138 - -
Vvi4g1104 325 PANTHER ZINC FINGER PROTEIN 168 226 - -
Vvi4g1104 325 Gene3D - 283 317 - -
Vvi4g1104 325 Gene3D - 42 77 - -
Vvi4g1104 325 Gene3D - 168 199 - -
Vvi4g1104 325 Gene3D - 3 33 - -
Vvi4g1104 325 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
Vvi4g1104 325 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Vvi4g1104 325 Pfam Zn-finger in Ran binding protein and others 288 315 IPR001876 -
Vvi4g1104 325 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Vvi4g1104 325 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1104 - - - vvi:100245437 700.279
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1104 . . . Bda10g00180 . . . Bma15g00948 . . . Cma07g00432 . Car07g00381 Sed14g1183 Cpe19g00853 . Bhi03g00876 Tan03g2064 Cmetu04g2634 . Hepe04g1584 . . Cla01g01972 Cam01g2064 Cec04g1723 Cco04g1789 Clacu01g2085 Cmu01g1962 Cre04g1636 Cone8ag0845 . . . Lsi01g00609 . . Cme08g00918 . . . . . . . . . . Cmo07g00431 . . . . . . . . . . . . . . . . . . . . . Csa06g03316 Chy02g00582 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010373 1 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 29