Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1105 ATGTTTATCTTTCCTAATTCCATACCAATTGGAAACATTCATAATAATCGCATGTGTTTCATCAAAACGACCTCTTATTCAATTCTCCCAGTTGACTTACCTCAGAAAGCTATGAGCGATCCCCGGGTGGAAACCCTTGACTCTTTCCTGCGGGGTTACCAGCGATCCGAACTCAGAATCGCATCCGAGTTCCTCACCACGTGGCTTCCTTTCCTCTCTAGAGATCTCTGTCACCACTGCGCTGAAACTCTCTCCGATCGAATCCGTTCTATTGGCCCTGAGGTTCATGGTGACGCGGAAAATTTGCCAAAGGATGAGAATGTAACTGTTTCGACCCCAGATATTATGCGATTGAAGAAGCACATTGACAGTCATTGTGATAATTGTGACTCCAATTCGCTGGGCAGTTGGAAAGATAACGATGCTGACACGAATTCGGTTGGGAGTTTTAAAGATGAGGTGAACGAGTGGTCTGAACCTGTCCCTGAAGCTTCTACAAGTGAATTAGCGTCTGAATCCCCCTCAATTGAAACTCCTAGTCCCCGCATATCTTGGGCTGATATGGCACAGGAAGACGAGCTCGAGGAGGAAGAGGAACATGAAGCTAACAAGCGGTCCATTGATGAGAATTCATCAACAGGGGAAGTTGGTGTCTCAAAGGTTCCACGAAAGGCTGAACTGCCAAGGGAACAGAGAGAGTATATTCGGTTTAGGAATGTCCAAAGGAAGAAAGATTTTATTTGTCTGGAGAGAGTTAAAGGGAAATTTGTTAATATTCTTGATGGGCTTGAGCTCCATGTGGGTATTTTTAGTGCAGCAGAGCAGAAAAGGATAGTTGACTTTATATATGAACTTCAGGAGATGGGAAGGAATGGCCAATTGAAAGAGCGCACATATTCCGCTCCCCAAAAGTGGATGAGAGGCAAGGGACGTGTGACTATCCAATTTGGTTGCTGCTATAATTATGCAACAGATAAAAATGGTAATCCACCAGGCATCCTTCAAAATGAGGTTGTAGATCCTATACCTCCTCTTTTCAAGGTGATCATTAGGAGGCTGGTTAGATGGCATGTTCTTCCTCCATCCTGTGTGCCTGACAGTTGCATTGTCAATATCTATGAAGAAGGGGATTGCATACCTCCTCACATCGACAACCATGATTTTGTTCGGCCTTTTTGTACTGTATCATTTCTCAGTGAGTGTGATATTGTTTTTGGAACAAACCTGAAGATTTTGGGTGCTGGTGAGTTTGTTGGTCCCTTCGCAATTCCCTTGCCTGTGGGTTCTGTTCTTGTCTTAAATGGAAATGGCGCTGATGTAGCTAAGCATTGTGTGCCTGCTGTTCCTAGTAAAAGGATATCAATTACTTTCCGGAAAATGGATGAATCTAAACGCCCTATTGGGTATCTTCCTGAACCTGATTTACAAGGACTTCAGCCAGTATCCTATGAAATGGACAGATCAAAGATATCAAATCCTCAAAAACCAGAGCGCCGCATGAACAGACAGGCAGTTAGAAGAGAGGGTAGTGTAGAAGCGAGGGGTTTTATGGAGAGAGGTGACCATTCAGGGTCTCACTACTCAAGTCGGGCTCCAAGAGGGCCTGCAAATAGGCGGAGGATCAGGATGAATTTGGCTGATTGA 1644 44.53 MFIFPNSIPIGNIHNNRMCFIKTTSYSILPVDLPQKAMSDPRVETLDSFLRGYQRSELRIASEFLTTWLPFLSRDLCHHCAETLSDRIRSIGPEVHGDAENLPKDENVTVSTPDIMRLKKHIDSHCDNCDSNSLGSWKDNDADTNSVGSFKDEVNEWSEPVPEASTSELASESPSIETPSPRISWADMAQEDELEEEEEHEANKRSIDENSSTGEVGVSKVPRKAELPREQREYIRFRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKERTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRWHVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGTNLKILGAGEFVGPFAIPLPVGSVLVLNGNGADVAKHCVPAVPSKRISITFRKMDESKRPIGYLPEPDLQGLQPVSYEMDRSKISNPQKPERRMNRQAVRREGSVEARGFMERGDHSGSHYSSRAPRGPANRRRIRMNLAD* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19827503 19834013 + Vvi4g1105 Vvi4g1105 785884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1105 547 Pfam 2OG-Fe(II) oxygenase superfamily 263 458 IPR027450 -
Vvi4g1105 547 Gene3D - 247 466 IPR037151 -
Vvi4g1105 547 PANTHER RNA DEMETHYLASE ALKBH9B 42 541 - -
Vvi4g1105 547 MobiDBLite consensus disorder prediction 153 220 - -
Vvi4g1105 547 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 42 541 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vvi4g1105 547 SUPERFAMILY Clavaminate synthase-like 259 460 - -
Vvi4g1105 547 MobiDBLite consensus disorder prediction 160 180 - -
Vvi4g1105 547 MobiDBLite consensus disorder prediction 490 526 - -
Vvi4g1105 547 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 364 461 IPR005123 -
Vvi4g1105 547 MobiDBLite consensus disorder prediction 486 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1105 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - vvi:100250563 1037.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48