Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1107 ATGGGACGGGCTGAGATTGACACCAGGGCACCCTTCCGGTCGGTTAAAGAAGCAGTTATGCTGTTTGGAGAAAGAGTTCTTGCTGGAGAGCTATATGCCAACAAGCTCAAAGAGATGAGAGACAGGGCAGGTGAAAATGCACAAGTTCAATCCAGATATGGAGCAGTGACAGCTGAACTCGAAGAAACAAAGCAAAGCCTTCAGAAGGCCAGAGAAGAAGGTGACTTGATGGTGAATTGTCTCAGATCTCTGAGAGAAGAGCTGGAAGAAACAAAAAGAGAGCTAATCAAGTTGAAGTCGAGAAACTTTGATAAACAGCTGGTTGATCCCGAGTTGGAAGACCTTAAATTCATTGAAAATGCCACCAAGATTGAAATAAACACACAAACTGAAGACGCAGAGGAGTTCCAAAAGAAGAGATACGTCACATTTGCAAGTCCCCCTTCCGTCACTCGAATCATTACCAACCATGACAGTAGTAGTGAATACAATTCGGAAGTTAGCAGGGCTTTGCCGCCTTTATGCAAAGCTGTAGAATTCGAAGGCTTCACAACGACAAATCAAATGGCTGGAGGGCAGGGCCAATCAGAAAGAGAAGACAAGGTTGCTCTAGAGCTCACTGAAGAAATCTTTCAGAGCATGGAAGTTGGCATGGCTTTTCGTGATTATAGTGGTAGGATCAGTTCAATGGATTTTCATAGGACATCAAGTTATCTAGTGACTGCTAGTGACGATGAATCCATTCGCCTGTATGATGTCGCCACTGGAACATGTTTGAAGACAATTAATAGCAAAAAGTATGGGGTTGATCTGGTCTGCTTCACTTCTGATCCTACAACAGTTATATACTCCTCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTTTCATTGCATGACAACAAGTATTTGCGTTACTTTAAAGGTCACCATGACAGGGTTGTCTCTCTTAGCTTGTGCTCTCGAAAAGAATGTTTTATCTCTGGCTCACTTGATCGAACTGTTTTACTTTGGGATCAACGAGCTGAGAAGTGTCAGGGTCTTTTACGTGTGCAAGGAAGGCCTGCTACAGCTTATGATGATCAAGGGTTAGTCTTTGCAATTGCATTTGGAGGATACGTAAGACTGTTTGATGCTCGCAAGTATGATAAGGGTCCTTTTGAAATCTTCTCTGTTGGGGGAGATATATCTGATGCAAATGTTGTCAAGTTCAGTAATGATGGGAGGCTTATGCTTTTAACTACTATGGATGGACATATTCATGTACTTGATTCATTCCGTGGCACGCTTCTATCCACATACAATGTCAAGCCAGTTTCAAGCACTTCCACTTTAGAAGCATCCTTCAGTCCCGAGGGAATGTTCGTTATATCAGGCTCAGGTGATGGGAGTGTCTATGCATGGAGTGTACGGAGTGGCAAAGAAGTTGCAAGCTGGATGAGCACTGAAACTGAACCTCCTGTCATAAAATGGGCTCCTGGAAGTCTGATGTTTGTGACTGGCTCTTCTGAATTATCATTTTGGATTCCAGACTTATCTAAATTGGGAGCTTATGCTGGAAGAAAGTAG 1569 43.08 MGRAEIDTRAPFRSVKEAVMLFGERVLAGELYANKLKEMRDRAGENAQVQSRYGAVTAELEETKQSLQKAREEGDLMVNCLRSLREELEETKRELIKLKSRNFDKQLVDPELEDLKFIENATKIEINTQTEDAEEFQKKRYVTFASPPSVTRIITNHDSSSEYNSEVSRALPPLCKAVEFEGFTTTNQMAGGQGQSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVATGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVRLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYAGRK* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19840837 19853733 - Vvi4g1107 Vvi4g1107 785886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1107 522 Coils Coil 78 101 - -
Vvi4g1107 522 Coils Coil 53 73 - -
Vvi4g1107 522 SUPERFAMILY WD40 repeat-like 220 508 IPR036322 GO:0005515
Vvi4g1107 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 478 IPR001680 GO:0005515
Vvi4g1107 522 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 193 521 - -
Vvi4g1107 522 SMART WD40_4 213 252 IPR001680 GO:0005515
Vvi4g1107 522 SMART WD40_4 255 290 IPR001680 GO:0005515
Vvi4g1107 522 SMART WD40_4 385 424 IPR001680 GO:0005515
Vvi4g1107 522 SMART WD40_4 427 469 IPR001680 GO:0005515
Vvi4g1107 522 SMART WD40_4 300 339 IPR001680 GO:0005515
Vvi4g1107 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Vvi4g1107 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 339 IPR001680 GO:0005515
Vvi4g1107 522 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Vvi4g1107 522 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Vvi4g1107 522 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Vvi4g1107 522 CDD WD40 220 509 - -
Vvi4g1107 522 Gene3D - 207 511 IPR015943 GO:0005515
Vvi4g1107 522 PANTHER WD40 REPEAT PROTEIN SWD2 193 521 IPR037867 GO:0048188
Vvi4g1107 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 256 - -
Vvi4g1107 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 307 339 - -
Vvi4g1107 522 Pfam WD domain, G-beta repeat 224 252 IPR001680 GO:0005515
Vvi4g1107 522 Pfam WD domain, G-beta repeat 303 339 IPR001680 GO:0005515
Vvi4g1107 522 Pfam WD domain, G-beta repeat 448 468 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1107 K14962 WDR82, SWD2, CPS35; COMPASS component SWD2 - vvi:100255744 673.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1107 Vvi18g1104 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1107 . . Bda04g00022 . . . . . . . Cma03g00688 Cma07g00430 Car03g00634 Car07g00378 Sed14g1189 Cpe19g00857 Cpe10g00661 Bhi03g00871 Tan03g2068 Cmetu04g0034 . Hepe04g1588 . . Cla01g01977 Cam01g2071 Cec04g1730 Cco04g1795 Clacu01g2092 Cmu01g1968 Cre04g1643 . . . . Lsi01g00605 . . Cme08g00924 Blo05g00828 . . . . Bpe06g00022 . . . Cmo03g00714 Cmo07g00428 . . . . . . . . . . . . . . . . . . . . . Csa06g03322 Chy02g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008578 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34