Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1108 ATGGGCCGGGTCGAAACCAAGCCCATCCCAATGCTGGCCCATCATTGTGAATCTCAAAAGAAAAAAGAAAAGGAAAGAAGTCAAGAACAGTCGATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGGTTCATCGGTTGGTGGTCAACAGAGATCCCAAACATACAAACTTTGTAGAGTTCCGTACACACAAGGTCATCTACAGGCGATATGCTGGATTGTTCTTCTCATTGTGTGTTGATATCACTGATAATGAGTTAGCATATTTGGAGTGCATCCATCTCTTTGTTGAGATATTGGACCATTTCTTCAGCAATGTGTGTGAGCTAGATTTGGTATTTAACTTTCACAAGGTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGGCAATAATAGAGAGAATGGGGGAGTTGGAAAAGCAAGAATGA 519 41.81 MGRVETKPIPMLAHHCESQKKKEKERSQEQSIRFILLQNRQGKTRLAKYYVPFEESEKHKVEYEVHRLVVNRDPKHTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKQE* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19853973 19859314 + Vvi4g1108 Vvi4g1108 785887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1108 172 Pfam Clathrin adaptor complex small chain 32 171 IPR022775 -
Vvi4g1108 172 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 32 172 IPR016635 GO:0015031
Vvi4g1108 172 CDD AP2_sigma 32 170 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Vvi4g1108 172 SUPERFAMILY SNARE-like 32 165 IPR011012 -
Vvi4g1108 172 PIRSF AP_complex_sigma 31 172 IPR016635 GO:0015031
Vvi4g1108 172 Gene3D - 31 172 - -
Vvi4g1108 172 PANTHER AP COMPLEX SUBUNIT SIGMA 32 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1108 K11827 AP2S1; AP-2 complex subunit sigma-1 - vvi:100260819 288.115
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1108 Vvi18g1106 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1108 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001475 3 2 2 4 3 2 4 2 1 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 4 73