Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g111 ATGGACTCCGATGCTGCTGAAGACTCCTCTCCAATGGCTACTCTCCTCCCTCTCGCCTCCGTCTCTCAACAACCCTACGTCTCCGAACTCCTCTCCTTCACACTCGATCGCCTCCACAAGGAACCAGAGCTTCTTAGAGTTGATGCTGAACGAATTCGTCGGCAAATGCAAGAGGTGGCAGTTAATAATTACCGTGCATTCATTTCTGCCGCTGATGCTTTACTAGCAATTCGAGAGGAAGTATCTTCTGTGGATAAACACCTAGAGTCTCTGATAAATGAAATACCAAAGCTGACATCTGGTTGCACTGAGTTCATTGAGTCTGCAGAACAGATTTTGGAGGAGAGAAAGATGAACCAAACATTGCTAGCCAATCATAGTACTTTGCTTGACTTGCTTGAAATTCCTCAGCTCATGGACACATGTGTACGGAACGGCAATTATGATGAGGCTCTTGATTTAGAGGCTTTTGTTTGCAAACTTTCAACAATGCACCCAAAATTGCCAGTCATTCAAGCACTGGCTGCAGAAGTTAGGCAAACAACCCAATCTCTTCTTCATCAGCTTCTCCAGAAACTTCGATCAAATATTCTGTTACCAGATTGTCTCCGCATTATTGGATATTTACGTCGAATAGGAGTATTTAGTGAGTTTGAAATGCGTTTACAGTTTTTGAGATGCCGAGAAGCATGGCTCACTGGAATTCTTGATGATTTGGACCAAAAAAATGCTTATGATTACTTAAAAGGGATGGTAAACTGTCAGAGGATGCATCTCTTTGATGTTGTTAACCAATACCGAGCCATATTTGCTGATGATACATCAGGAAGTGAAGAAAACTATGATGGTGGACTTCTTTTTAGTTGGGCTATGCATCAGATAACATCTCACCTTAGAACTCTGAAAGCCATGCTCCCCAAGATAACTGAAGGCGGGTCTTTGTCAAATATCCTGGACCAGTGCATGTATTGTGCAATGGGACTTGGTTGGGTTGGACTGGATTTTCGGGGATTGCTCCCATCTCTTTTTGAAGAGGCAGTTCTCAATTTATTCTCAAAGAATATGAATACAGCTATAGAGAATTTTCAGTTAGTATTAGATTCACATCGTTGGGTACCATTGCCAGCTGTTGGCTTCCCTTCTGGTGGCGTAGGTGAAGAAACTCGGGAGGATGTGACCCCCCCATCTTATTTAATGGAGCATCCACCTCTTGCAGTGTTTGTTAATGGTGTATCTGCAGCGATGAATGAGCTACGGCCCTGTGCTCCAATAAGCTTAAAACACGTGCTTGCGCAAGAATTGATCAACGGATTGCGGGCTGTTTCCAATTCCTTATTGAGGTACAACGCGTCTCGGATGCTCAGAGAAAACGAATCACTTCTTTTCCTCTCACTTTGCCGAGCATTCATCGAGGTTGCTTATCCACACTGTGCCACTTGCTTTGGCCGCTGCTACCCAGGCGGAGCTGCTCTCATCATGGACGCAAAGAACTTGTACGACGGAATTGGCAACCTATTAGCAGTTTCCGCCTCAAGAGAACTCCCCAAATCAGTGACCACCACAGAGGAGAACAGTGTAACAGTAACGGAAAACGGCAACCTGCCCAACGAAGAGAATGGAGTCATGCCTGAAACGGAGCAGGCTCTAAATGGCAAAGTAGATGAGGAGGAGGAGAATGACCTCACTTCCCTAACTGAAAAACCTGCGGATGAATGA 1716 44.81 MDSDAAEDSSPMATLLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDAERIRRQMQEVAVNNYRAFISAADALLAIREEVSSVDKHLESLINEIPKLTSGCTEFIESAEQILEERKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVCKLSTMHPKLPVIQALAAEVRQTTQSLLHQLLQKLRSNILLPDCLRIIGYLRRIGVFSEFEMRLQFLRCREAWLTGILDDLDQKNAYDYLKGMVNCQRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLRTLKAMLPKITEGGSLSNILDQCMYCAMGLGWVGLDFRGLLPSLFEEAVLNLFSKNMNTAIENFQLVLDSHRWVPLPAVGFPSGGVGEETREDVTPPSYLMEHPPLAVFVNGVSAAMNELRPCAPISLKHVLAQELINGLRAVSNSLLRYNASRMLRENESLLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKNLYDGIGNLLAVSASRELPKSVTTTEENSVTVTENGNLPNEENGVMPETEQALNGKVDEEEENDLTSLTEKPADE* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1104424 1110865 - Vvi4g111 Vvi4g111 784890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g111 571 PIRSF COG8 3 570 IPR016632 GO:0017119
Vvi4g111 571 MobiDBLite consensus disorder prediction 549 571 - -
Vvi4g111 571 Pfam Dor1-like family 27 360 IPR007255 GO:0017119
Vvi4g111 571 SUPERFAMILY Cullin repeat-like 128 346 IPR016159 -
Vvi4g111 571 MobiDBLite consensus disorder prediction 516 540 - -
Vvi4g111 571 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 9 523 IPR007255 GO:0017119
Vvi4g111 571 MobiDBLite consensus disorder prediction 516 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g111 K20295 COG8; conserved oligomeric Golgi complex subunit 8 - vvi:100245590 1118.61
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g111 . Blo12g01018 . Bda03g00138 . . Bma04g00122 . . . Cma01g01725 . Car09g00296 . . . Cpe06g00247 . . . . . . . Cla05g01845 . . Cco05g2041 . Cmu05g1843 . Cone4ag1674 Cone7ag1279 . . Lsi04g01414 . . . . . . . . Bpe04g00120 . . Sed11g1825 Cmo01g01788 Cmo09g00348 Cma09g00348 . Car01g01338 . . Cpe02g00271 Bhi09g03133 Tan01g4607 Cmetu07g2154 . Hepe01g1897 Mch11g0428 . . . . . . . . . . . Cme07g00210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006496 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38