Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1112 ATGCAAAATTTCCTTTTAATTGATTACCAAAAATATAAAAATTACATAATTTTCTTCATAATGAATATTGCTTCTTTATCTCTCATGTCTTTCTCTCTCTCTTTCTCATGCGCCTTCATCCCTCAAGTGGCTCATCCAAAATTCAACGTTTTAGAAGAATTCGATTTGGATACCATTCCCCTTAACAGAGGATTTAATAAGAACTTCTTCCAGATTTCTCCTGGGTCTTTTTCTCTTTATTCTCTCAGTTCTAATAAGCATCAATGGAGCCAACAACTTTTCGTACTCGACGAGGAGGAGCGTCCCAAGGTGGCATACAACCATTTCAGCGACGCCATTCCCGTGATATCTCTCGCCGGTATCGATGAAGCCGATGGCCGTAGGTTGGACATTTGCCAGAAAATTGTGGAGGCGTGTGAGGAGTGGGGGATCTTCCAAGTGGTTGATCATGGCGTTGATTCTCATCTCATTTCAGAGATGTTTCGTCTCTTTGGAGAGTTCTTCGCTCTTCCTCCAGATGAGAAACTTCGATTTGACATGTCAAGCAGCAAAAAAGGCGGTTTTCTTGTCTCTAGCCACCTTCGAGGAGAAGCGGTGCACAATTGGCGGGAGTTTTTAACTTACTTCTCATACCCACTTCGGGAGAGGGACTACTCAATGTGGCCGGAAAAGCCGGAGGGATTGACGGCAGTGATGAAGGAGTACAGCGAGAAGCTCATGGGTTTGGCATGCAAGTTGCTGGAGGTGATGTCTGAGGCTATGGGTTTGGAGAAGGAGGCCTTGTTTAAGGCCTGTGTGGACATAGACCAGAAGGTAAAAGGGAAACAAAGAATGGGGGAAAGTTCCCAGGGGCCACAGCAGAGGCAGAGGACTCAGCAGTTTGAGAGGCGTCCCTCGTTCTATGCAGGAGAGGGGCAGATTGCTCAGAGGGCGGCTGCTAATAGAGTATGTTATGGTTGTGGAGCAGAAGACCATTTATGGAGGGCTTGCCCATTGCGAGGCGCACAGCAGACTCGACCTCAGTCTCAGGGAAGTTCTCAGCAACAGTCAGTAGTGTCTTTCCAGCCCCCTCAGCTTCAGTTGCCTTACTATCAGATGCCACAATTACCCCCAGCAGCGCAGGGAACCAGGACAACTACCACGAGTCAGACCCGCTCTTCTCAGGGGTCGAATGCTAGAGGTAGGGGAAGGCAGGCAGCAGGAAGAGTTTTTGCCTTGACCCCAACAGAGCCAGAGGAGGATGCCCTTTTGGTGGAAGGTATGATTTTGGTATATAGTACTTGGGTGCGTGTTTTGTTTGATACTGGTGCAACTCATTCTTTCATTTCTGCATCTTGTGCTAATGCATTGGGGTTGAAATCGGAAAGGGTAGAGAATTTGTTACTTATTGAGTCTCCTATGGGTACGAACTCTAGAGTTGATAGAATATGCAAGGGGTGTGTTATTACCTTGGCAGATAGAGCACTAAATGTGGATTTGAGGATTTTGGATATGACTGGGTATGATGTTATTTTGGGAATGGATTGGTTGGCAGTGTATAGAGCGGTTATTGATTGTCATCGCCGCAGGATAATATTTTGTTTGCCAGAGGGATTTGAGGTTTGTTTTGTTGGAGGGAAGTGTGTTAGTTTGCCTTTTTCGCAGTCCGATCCGTGCTATCAGTATGTGTTGAGGAAAGGATCAATAAATTTCCTAGCTTGCCTTCGTGGTAAGGAGAAAGCCCAGAAGGACATTACAGAAATTCCAATGGTGAGGAAGTTTCAGGATGTATTCCCAGATGAGTTACCAGGTTTACCACCGCATAGAGAGTTTGATTTCTCTATTGAAGTATACCCAGGAACTGATCCTATTTCAGTATCCCCTTATAGGATGGCCCCTCTTGAGTTGAAAGAATTGAAAACTCAGTTAGATGAATTGTTGGGTAGGGGTTTTATTCGTCCAAGTACATCGCCATGGGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATGTCCCTGCTGCTTTCATGGATTTAATGAACAGGGTATTTCGTGCTTACTTGGATCAGTTTGTGATTGTCTTTGTGGATGACATCTTGATCTACTCCAGGAGTTTGGAGGAGCATAAGCAGCATTTAGTGACCACCCTTGGAACTTTGAGAAGGCATCAGTTGTATGGGAAGTTGGACAAAAGTGAGTTTTGGCTTACTGAAGTGAACTTCTTAGGCCATGTGGTTTCTGAGGCAGGAATAGCAGTAGACCATTCAAAGGTGGAAGCTGTACAGGAGTGGCAAAGGCCTACCAATGTATTTGAGGTTAGAAGTTTCTTGGGGTTGGCTGGATATTATAGGAGGTTTGTGGAAGACTTCTCTAGAATTGCAGCACCAATGACTCGGTTGACTAGAAAAGGGGTGAAGTTTGATTGGAATGAGGAGTGTGAGAATGCTTTCCAGGAATTGAAGCGGAAATTGACCACTGCTCCAGTGTTAACTGCTCCTATTAGTGGAGAGTTGTTTACCATTTATTGTGATGCTTCCACAGTGGGGTTAGGGTGTGTGCTAATGCAGCAAGGCAAGGTGGTAGCTTATGCCTCAAGACAATTAAAGCAGCATGAGCGGAATTATCCAGCACATGATTTGGAGCTTGCAGCAGTGGTGTTTGCCCTAAAGACTTGGAGACACTATTTGTATGGAGAGAAGTTTGAGGTGTACTCTGATCACAAGAGTTTGAAATACATTTTCACTCAAAAGGATTTGAACTCTAGGCAGAGGAGATGGATGGAGACATTGGAAGATTATGATTTTGCCCTTCATTACCAACCTGGGAAGGCGAATGTTGTAGCAGATGCCTTGAGTAGAAAGAGCTATGGCCAGTTGTCTAGCTTGGGGTTGAGAGAGTTTGAGATGCATGCAGTTATTGAGGACTTTGAGCTATGTCTTAGTCAGGAAGGACGTGGTCCATGCTTATACAGCATATCAGCTAGACCAATGATTATCCAAAGAATAGTGGAGGCCCAAGTTCATGATGAGTTTTTAGAAAAGGTTAAAGCCCAGTTGGTAGCAGGTGAAATAGATGAAAATTGGTCTATGTATGAAGATGGGAGTGTGAGGTTCAAAGGGAAATTGTGTGTGCCAAAAGATGTGGAGTTGAGAAATGAACTTCTAGCAGATGCTCATAGGGCGAAGTATACCATCCACCCTGGGAATACCAAGATGTATCAAGACTTAAAGAGGCAGTTTTGGTGGAGTGGGATGAAGAGAGATATTGCTCAGTTTGTAGCTAATTGTCAGATTTTGTTGGTCAATTTCTACCCCAAATGTCCACAACCGGACCTCACTCTCGGACTCAAGCGCCATACGGATCCCGGTACCATCACGCTGCTGCTTCAGGATCAGGTGGGTGGGCTTCAGGCTACAAGGGATGGTGGAAAGACTTGGATCACCGTTCAGCCTGTTGAAGGAGCTTTTGTTGCCAACCTTGGAGATCATGGCCATTTCATGAGCAATGGAAGATTCAAGCGCGCGGAACACCAAGTGGTGGTCAACTCCAACTGTGATCGATTTTCGATAGCAACATTCCAAAATCCGGCACCAGAAGCAATAGTTTATCCTCTGAAGATAGAAGAAGGAGAGAAGGCAGTGTTGGAGGAGGCCATAACCTTCCAAGAGATGTACGTGAGGAAGATGAACCGGGACGTCAACCGTCCCTGGCTAAAGAAGCCTGTCAAGGATCACCAGTCTTATGATTTTGATCATCAATCCAAACTGGCCCCCAAGCTTGCTGAGAATATTTTCGTTTAA 4704 36.1 MQNFLLIDYQKYKNYIIFFIMNIASLSLMSFSLSFSCAFIPQVAHPKFNVLEEFDLDTIPLNRGFNKNFFQISPGSFSLYSLSSNKHQWSQQLFVLDEEERPKVAYNHFSDAIPVISLAGIDEADGRRLDICQKIVEACEEWGIFQVVDHGVDSHLISEMFRLFGEFFALPPDEKLRFDMSSSKKGGFLVSSHLRGEAVHNWREFLTYFSYPLRERDYSMWPEKPEGLTAVMKEYSEKLMGLACKLLEVMSEAMGLEKEALFKACVDIDQKVKGKQRMGESSQGPQQRQRTQQFERRPSFYAGEGQIAQRAAANRVCYGCGAEDHLWRACPLRGAQQTRPQSQGSSQQQSVVSFQPPQLQLPYYQMPQLPPAAQGTRTTTTSQTRSSQGSNARGRGRQAAGRVFALTPTEPEEDALLVEGMILVYSTWVRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRICKGCVITLADRALNVDLRILDMTGYDVILGMDWLAVYRAVIDCHRRRIIFCLPEGFEVCFVGGKCVSLPFSQSDPCYQYVLRKGSINFLACLRGKEKAQKDITEIPMVRKFQDVFPDELPGLPPHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDELLGRGFIRPSTSPWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLDKSEFWLTEVNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVEDFSRIAAPMTRLTRKGVKFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDASTVGLGCVLMQQGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDHKSLKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSRKSYGQLSSLGLREFEMHAVIEDFELCLSQEGRGPCLYSISARPMIIQRIVEAQVHDEFLEKVKAQLVAGEIDENWSMYEDGSVRFKGKLCVPKDVELRNELLADAHRAKYTIHPGNTKMYQDLKRQFWWSGMKRDIAQFVANCQILLVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVEGAFVANLGDHGHFMSNGRFKRAEHQVVVNSNCDRFSIATFQNPAPEAIVYPLKIEEGEKAVLEEAITFQEMYVRKMNRDVNRPWLKKPVKDHQSYDFDHQSKLAPKLAENIFV* 1568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19932425 19981450 + Vvi4g1112 Vvi4g1112 785891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1112 1567 CDD RNase_HI_RT_Ty3 1141 1255 - -
Vvi4g1112 1567 MobiDBLite consensus disorder prediction 276 301 - -
Vvi4g1112 1567 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 431 442 IPR001969 GO:0004190|GO:0006508
Vvi4g1112 1567 Gene3D - 1140 1205 - -
Vvi4g1112 1567 CDD retropepsin_like 421 511 - -
Vvi4g1112 1567 MobiDBLite consensus disorder prediction 371 394 - -
Vvi4g1112 1567 SUPERFAMILY DNA/RNA polymerases 583 653 IPR043502 -
Vvi4g1112 1567 SUPERFAMILY DNA/RNA polymerases 972 1240 IPR043502 -
Vvi4g1112 1567 MobiDBLite consensus disorder prediction 363 401 - -
Vvi4g1112 1567 SUPERFAMILY Clavaminate synthase-like 1395 1532 - -
Vvi4g1112 1567 SUPERFAMILY Clavaminate synthase-like 83 266 - -
Vvi4g1112 1567 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 1397 1555 - -
Vvi4g1112 1567 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 91 272 - -
Vvi4g1112 1567 Pfam non-haem dioxygenase in morphine synthesis N-terminal 113 223 IPR026992 -
Vvi4g1112 1567 MobiDBLite consensus disorder prediction 277 296 - -
Vvi4g1112 1567 SUPERFAMILY Acid proteases 422 518 IPR021109 -
Vvi4g1112 1567 Pfam Retroviral aspartyl protease 399 526 - -
Vvi4g1112 1567 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 598 657 - -
Vvi4g1112 1567 Pfam RNase H-like domain found in reverse transcriptase 1140 1234 IPR041373 -
Vvi4g1112 1567 Pfam Integrase zinc binding domain 1349 1399 IPR041588 -
Vvi4g1112 1567 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1397 1555 - -
Vvi4g1112 1567 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 91 272 - -
Vvi4g1112 1567 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 972 1046 IPR000477 -
Vvi4g1112 1567 CDD RT_LTR 972 1047 - -
Vvi4g1112 1567 Gene3D - 956 1051 IPR043128 -
Vvi4g1112 1567 Gene3D - 1056 1139 IPR043128 -
Vvi4g1112 1567 Pfam 2OG-Fe(II) oxygenase superfamily 1398 1496 IPR044861 -
Vvi4g1112 1567 Gene3D - 1378 1536 IPR027443 -
Vvi4g1112 1567 Gene3D - 78 278 IPR027443 -
Vvi4g1112 1567 Coils Coil 972 972 - -
Vvi4g1112 1567 Gene3D Acid Proteases 412 533 IPR021109 -
Vvi4g1112 1567 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 1396 1497 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1112 - - - vvi:109122600 850.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1112 Vvi18g1112 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1112 Blo04g00885 Blo16g00079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00961 . . . . Cma16g01237 . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000006 2 55 1 5 3 7 1 19 23 1 28 10 23 1 39 61 9 1 0 16 4 70 1 20 0 1 2 11 4 1 419