Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1114 ATGGATCAGTGGAAAGCTGATGATTTCACGCAATCAGTTGCACCAGAGTTAGCCCCTTCCAATCCTCTTTCGTTGCCCTCCTCCAATAATCGCTTGCCGGAAGCCAGACAAAGAACTGAAGTGGAAGCAAAGGATTCAATTGCAGCAAGAAAAGTTCAGAAGGCAGACCGTGAAAAGTTAAGGAGGGACAGACTGAATGAGCATTTTCTTGAGTTGGGAAACACATTAGACCCAGATAGGCCCAAGAATGACAAGGCAACCATCCTTGCAGATACAATTCAAATGCTGAAGGATTTGACTGCTGAAGTCAACAGACTAAAAGTTGAGTGTGCTGCACTTTCTGAAGAATCTCGTGAGCTAGTGCAGGAGAAGAATGAACTAAGAGAAGAAAAGGTAGCTCTAAAGTCTGATATTGACAATCTTAATGTTCAATATCAGCAAAGGCTCAGGGTCATGTTTCCATGGGCTCCAATCGATCCTTCTGTTGTCATGGGTCCTTCACCCTATTCTTATCCAGTTCCTGTGCCTGTTCCTTCTGGTCCAATTCCCATGCATCCATCTCTACAGCCATTTCCTTTCTTTGGAAATCAGAATCCTAGTGGAATCCCCAATCCCTGTTCAACTTTTATTCCATATCAAACTCCTGCTAATCCTCCTACTGAAGTTCCATCTGCCCAATATGCATCTGCTTCTCATGTGTCAAGCAAACCAGATTCCAAAAGCAAGTCATCAGATCGTGAAAGGAGCAGCAACACTGAAAAATGCGATGAATCTAATGATGTGGCAACAGACCTTGAACTAAAGACACCTGGATCATCATCACAACAGGATTTGCTGACAGGGGAAAAGAAGGGCAAACAATCACAAAGGAAGGAAAGAAGTGCTACAGATGGAAGCTGTTCAAGCAAGTATTCTTCTTCTCAAGCTCTCCAGGACAGCTCCTCCAACAGTGTGGGTGACCTCCCAAAATCTGATAAGTAA 981 43.83 MDQWKADDFTQSVAPELAPSNPLSLPSSNNRLPEARQRTEVEAKDSIAARKVQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILADTIQMLKDLTAEVNRLKVECAALSEESRELVQEKNELREEKVALKSDIDNLNVQYQQRLRVMFPWAPIDPSVVMGPSPYSYPVPVPVPSGPIPMHPSLQPFPFFGNQNPSGIPNPCSTFIPYQTPANPPTEVPSAQYASASHVSSKPDSKSKSSDRERSSNTEKCDESNDVATDLELKTPGSSSQQDLLTGEKKGKQSQRKERSATDGSCSSKYSSSQALQDSSSNSVGDLPKSDK* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20011687 20015380 - Vvi4g1114 Vvi4g1114 785893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1114 326 PANTHER TRANSCRIPTION FACTOR BHLH11 26 325 - -
Vvi4g1114 326 Gene3D - 47 133 IPR036638 GO:0046983
Vvi4g1114 326 Coils Coil 89 144 - -
Vvi4g1114 326 MobiDBLite consensus disorder prediction 283 297 - -
Vvi4g1114 326 MobiDBLite consensus disorder prediction 298 326 - -
Vvi4g1114 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Vvi4g1114 326 MobiDBLite consensus disorder prediction 14 34 - -
Vvi4g1114 326 MobiDBLite consensus disorder prediction 1 46 - -
Vvi4g1114 326 SMART finulus 55 105 IPR011598 GO:0046983
Vvi4g1114 326 MobiDBLite consensus disorder prediction 238 263 - -
Vvi4g1114 326 MobiDBLite consensus disorder prediction 265 282 - -
Vvi4g1114 326 MobiDBLite consensus disorder prediction 204 326 - -
Vvi4g1114 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 118 IPR036638 GO:0046983
Vvi4g1114 326 PANTHER TRANSCRIPTION FACTOR BHLH121 26 325 IPR044579 GO:0003700|GO:0055072
Vvi4g1114 326 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Vvi4g1114 326 MobiDBLite consensus disorder prediction 204 237 - -
Vvi4g1114 326 CDD bHLH_AtILR3_like 54 128 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g111 Vvi4g1114 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14705 PF00010 HLH 9.20E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1114 - - vvi:100259173 537.339