Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1115 ATGAAGATAGTGACTTATAACGTGAATGGCCTAAGGCCACGCATCTCTCAGTTCGGCTCTCTCCTCAAATTTCTCAGTTCCCTCGACGCCGACATCATCTGCGTTCAGGAGACGAAGCTATCGAGGCATGAACTGACGGCAGATGTGGTGATGGCGGATGGATACGAATCCTTCTTTTCTTGCACCCGCACGAACAGCAAAGGTCGGGTGGGCTACTCCGGTGTTGCAACATTTTGCCGTGTGAAGTCAGCATTTTCGAGCACTGAAGTGGCGTTGCCAATTGCAGCAGAAGAAGGCTTCACCGGCCTCCTTGAAAAGTCTGGAGGGTTTGGAACTGGAAAGGATGAAATCCCTGTAAAAGCAGAAGGTCTTGAAGAGTTTGCCAAAGATGAGCTTCTCAAGGTTGACAGTGAGGGCCGTTGCATTATCACGGATCATGGTCATTTTGTTCTTTTCAATATATATGGGCCCCGAGCTGACTCTGAGGATACAGAAAGGATTCAGTTTAAGCACACTTTTTTCCAGATATTACAGAAAAGATGGGAGACTCTCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAGTTCAGGAGATGGTTTAGATCTATGCTAGTGGAATGTGGAGGCCCTTTCTTTGATGTTTTTAGAGCAAAACATCCTGACAGAAGAGAAGCATACACATGCTGGTCATCGAGCACAGGTGCAGAGGAATTCAATTATGGGTCAAGAATTGACCATATTCTCAGTTCTGGGTCATGCTTACATCAAGACCATTGCCTGCAAGATCGTATCTTTGTTACTTGCCATGTTAAAGAATGTGACATATTGACTCAGTTTAAGCGATGGAAGCCTGGAAACAAACCCAGGTGGAAAGGAGGGAGAAGCATCAAACTAGAAGGTTCTGATCATGCTCCTGTTTTTATGAGTTTAATGGATATCCCTGATGTTGCGCAGCATAGTACTCCATCTTTGTCTGCTAGATATGTTCCTACGGTTCATGGGTTCCAGCAAACTATTGCATCAGTATTAATGAAAAGACAAAAGGCTGAGCAAGTAAAGACCTTCGAGGTATCAAGTTCATTTTCAGATGAAAATATTACAACTAGAAGCAAACAAAATCAACGCCTGGCACAGTAA 1203 44.39 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFSCTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVKAEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENITTRSKQNQRLAQ* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20015676 20020532 + Vvi4g1115 Vvi4g1115 785894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1115 400 ProSiteProfiles AP endonucleases family 1 profile. 1 334 IPR004808 GO:0004518|GO:0006281
Vvi4g1115 400 SUPERFAMILY DNase I-like 1 331 IPR036691 -
Vvi4g1115 400 ProSitePatterns AP endonucleases family 1 signature 3. 261 272 IPR020848 GO:0003677|GO:0004519|GO:0006281
Vvi4g1115 400 PANTHER AP ENDONUCLEASE 1 394 IPR004808 GO:0004518|GO:0006281
Vvi4g1115 400 Pfam Endonuclease/Exonuclease/phosphatase family 4 273 IPR005135 GO:0003824
Vvi4g1115 400 Gene3D Endonuclease/exonuclease/phosphatase 1 333 IPR036691 -
Vvi4g1115 400 ProSitePatterns AP endonucleases family 1 signature 1. 30 39 IPR020847 GO:0003677|GO:0004519|GO:0006281
Vvi4g1115 400 PANTHER DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE 2 1 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1115 K10772 APEX2; AP endonuclease 2 [EC:4.2.99.18] - vvi:100264349 802.357
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1115 . . . Bda10g00185 . . . . . . . Cma07g00426 . Car07g00373 Sed10g0999 . . Bhi03g00865 Tan03g2085 Cmetu04g0755 . Hepe04g1593 . . . . . . . . . . . Cone6ag1683 . Lsi01g00600 . . . . Blo06g00300 . . . . . . . . Cmo07g00423 . . . . . . . . . . . . . . . . . . . . . . Chy02g00572 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011738 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30