Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1118 ATGGCTACTGCAGTCACTGCTGCAGTCTCTCTTCCCTCCTCTAAGACTACCTCTCTTTCAGCCAGAACCTCCATCATCTCACCAGAAAGAATCAGCCTTAAGAAGGTTCCTTTGTTTTACAGAGATATCTCTGCCGGTGGGAGAGTGGTTTCTATCAGAGCCCAGGTCACCACTGAGGCTCCTGCCAAGGTCGAGAAGATTTCCAAGAAAAATGAGGAAGGAGTGATTGTTAACAAGTTTAAGCCTAAGAATCCTTACATTGGCAGATGTCTTCTCAACACTAAGATCACCGGGGATGATGCTCCTGGAGAAACATGGCACATGGTCTTCAGCACCGAGGGAGAAGTTCCCTACAGAGAAGGGCAATCCATTGGGGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTTTGTGTGAAACGGCTTGTCTACACCAATGAGAATGGGGAACTAGTTAAGGGAGTCTGCTCAAATTTCTTGTGTGACTTGAAGCCTGGGGCCGAAGTGAAGATTACAGGGCCTGTGGGGAAAGAAATGCTTATGCCAAAGGATCCAAATGCCACAATCATAATGCTTGCAACTGGAACTGGAATTGCTCCTTTCCGCTCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAGTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTTCCCACAAGCAGCTCACTACTCTATAAGGAGGAATTCGAGAAAATGAAGGAGAAGAAGCCTGAGAACTTCAGGTTGGACTTTGCAGTGAGCAGAGAGCAATCAAATGCCAAAGGAGAGAAGATGTACATTCAGACCCGAATGGCTGAGTATGCAGAAGAACTCTGGGAATTACTGAAGAAAGACAACACCTATGTCTATATGTGTGGGCTCAAGGGCATGGAGAAGGGAATTGATGACATAATGGTGTCACTGGCTGCTAGAGATGGCATCGATTGGATCGAGTACAAGAGGCAGTTGAAAAGGGCAGAGCAATGGAATGTTGAAGTCTATTAA 1089 45.91 MATAVTAAVSLPSSKTTSLSARTSIISPERISLKKVPLFYRDISAGGRVVSIRAQVTTEAPAKVEKISKKNEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKKPENFRLDFAVSREQSNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKRAEQWNVEVY* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20077076 20079876 + Vvi4g1118 Vvi4g1118 785897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1118 362 Gene3D - 200 362 IPR039261 -
Vvi4g1118 362 Gene3D Translation factors 53 199 - -
Vvi4g1118 362 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 208 362 IPR039261 -
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 148 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 244 253 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 256 267 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 292 308 IPR001709 GO:0016491
Vvi4g1118 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 316 324 IPR001709 GO:0016491
Vvi4g1118 362 CDD CYPOR_like_FNR 78 362 - -
Vvi4g1118 362 PIRSF FNR-PetH 3 362 IPR035442 GO:0016491
Vvi4g1118 362 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 1, CHLOROPLASTIC 1 362 - -
Vvi4g1118 362 PIRSF Frd-NADP+_RD 1 362 IPR015701 GO:0016491
Vvi4g1118 362 Pfam Oxidoreductase NAD-binding domain 215 329 IPR001433 GO:0016491
Vvi4g1118 362 PANTHER - 1 362 IPR015701 GO:0016491
Vvi4g1118 362 SUPERFAMILY Riboflavin synthase domain-like 62 206 IPR017938 -
Vvi4g1118 362 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 83 205 IPR017927 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1118 K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2] - vvi:100241976 719.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1118 Vvi18g1127 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1118 . Blo16g00081 . . . Bpe13g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1685 Cone9ag1607 . . . . . . Bda11g01835 . . . . Bma06g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01103 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009581 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33