Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1119 ATGGCGCAGGAGAGGTCAACCGGGGTGGTTAGGTGGTTTAGCGATCAGAAAGGGTTCGGCTTTATCACTCCCAACGAGGGCGGTGAAGATCTCTTTGTGCACCAATCGTCCATCAAGTCCGACGGTTTTCGCAGCCTCGGAGAAGGCGAGACCGTTGAGTTCCAGATCGTCCTCGGGGAAGATGGTAGGACCAAGGCCGTAGATGTCACCGGACCTGACGGATCTTCCGTTCAGGGAAGCAAGAGAGACAACTACGGGGGTGGTGGTGGCGGCGGGATTGCGTCCGAAGAAATAATGGCGGCGGCGGCGGCGGTAGTGGTGGAGGAGGCGGAGGCGGAGGTTGTTATACCTGCGGTGGCGGTGGCGGTTGTTATAACTGTGGTGATTATGGGCACCTGGCTAGGGATTGCACTCTGGAAAGCGGCAGCGCTGGTAGGTTCGGTGGTGGCGGAGGTGGAGGCGGTGGAAGGTTTGGTGGCGGTGGCGGTGGATGCTACAACTGTGGACAGGAAGGGCATTTTGCTAGAGAATGCCCTAACCCTAACCCATCGTGATGAAGGGAAAAGAGGAGTAATAGTATACATTCTCTTTTTTCCAGCATCTTCAAAAATTTTTTTTCCAGTATAG 627 55.34 MAQERSTGVVRWFSDQKGFGFITPNEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGEDGRTKAVDVTGPDGSSVQGSKRDNYGGGGGGGIASEEIMAAAAAVVVEEAEAEVVIPAVAVAVVITVVIMGTWLGIALWKAAALVGSVVAEVEAVEGLVAVAVDATTVDRKGILLENALTLTHRDEGKRGVIVYILFFPASSKIFFPV* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20080785 20081788 + Vvi4g1119 Vvi4g1119 785898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1119 208 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Vvi4g1119 208 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Vvi4g1119 208 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Vvi4g1119 208 SMART csp_8 7 72 IPR011129 GO:0003676
Vvi4g1119 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 96 - -
Vvi4g1119 208 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Vvi4g1119 208 Gene3D - 1 84 IPR012340 -
Vvi4g1119 208 PANTHER COLD SHOCK PROTEIN 2 1 96 - -
Vvi4g1119 208 MobiDBLite consensus disorder prediction 68 88 - -
Vvi4g1119 208 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Vvi4g1119 208 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Vvi4g1119 208 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Vvi4g1119 208 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1119 - - K09250 vvi:100259081 175.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g135 Vvi4g1119 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001587 3 2 3 3 4 2 3 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 0 1 3 2 3 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14706 PF00313 CSD 5.50E-25 CL0021 Vvi TF