Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g112 ATGGCTCTTCACTTTGCTTTTGATGATGGCATTGCACCGATAAACTCTACTGTTGTCGCCATCGATAAAGACAAGAATAGCCACTATGCTGTTCGATGGACAATTGATCATCTCTTAATCAACAATCCACAAATTATTCTGATTCATGTTAGACATAAATACTTGCAACATCAGGGTTACAATGCTGGTGAGGGTGGGGGTGAGTCTGAAACTGATGCACAACAACTTTTCATTGCATATCGAGGGTATTGTGCTCGCAAAGCGATTCAACTGAAAGAGATTGTTCTTGATGATGTTGATGTGTCTCGAGCCATTATAGACTACATCACCAGGAACCGCATCAAGAATATCGTTGTGGGAGCGTCAACCAAGAATGCCCTTACAAGGAAGTTTAGGAACTATGATGTGTCAACCAGCATAACGAAATCTGCACCAGACTTCTGTTCTGTATATGTCATTTCAAAAGGGAAGGTGGTCTCGGTCCGGTCGGCGCAAAGGCCAGTGGTTAACACTGCAGTCCCACCAAAGCTGCCATCTCCTAGAGGACTTCCCCCTCAAGCTCTACCTGATAACCCAGAGCTTGAAGATGTAGCCAGAATTCAATCTTTGAAGGGGTGGAGAAATGTAGGATCAGAGAGGGTTACCTTTGAAAGGACCAACAACAACATGAGGGTGCCAAGAGCCAGGAGTGCCCCAACCAATCTCTCCATTGATAATATTGATTTGCAAAGGCCTTCAACTAGTCGGGATTCTGTTTCGGATGATCTTGATTTCTCGACCCCAATTAGGTTTGCATCAGTTGATTTGAGTAGCCAGGACATGGATTTCTCCATTACGTCAGACTCAGGCAGAGACTCCCTCACCCCAACATCTGCAAAAGAATTAGCTGCTGAGATGAAAAGATTAAAGCTTGAACTGAAGCAAACCATGGACATGTACAGCACAGCTTGCAAAGAAGCAATAACAGCTAAACAGAAGGCTAAAGAGCTTCATCAATGGAGGATGGAGGAGGCTAGGAGATTTAAGGAAGCCAGGCTTTCTGAGGAGGCAGCACTTGCCATGGCAGAGATGGAGAAGGCAAGGTGCAAAGCTGCCATAGAAGCAGCTGAGGTAGCACAGAAACTAGCTGAGAAGGAAGCACAAAGAAGAAGGTATGCAGAGTTGAAGGCTTCAAGGGAGGCGGAAGAGAAGGCACGGGCATTGACTGCTTTGGCTCATAATGATGTCCGCTATAGGAAATACGCCATAGAAGAGATTGAAGTAGCCACTGAGAAATTCTCTCAGGCCATGAAAATTGGGGAAGGTGGATATGGCCCAGTTTATAGAGGCAAACTTGATCATACCCCTGTTGCCATCAAAGTTTTGAGACCTGATGCTGCACAAGGGATGAGGCAATTCCAACAGGAGATTGAGGTTCTAAGCTGCATGAGACATCCAAACATGGTTCTTCTCCTAGGTGCCTGTCCTGAGTATGGATGCCTGGTATATGAATACATGAGCAATGGCAGCTTGGAAGATCGGCTTTTGAGAAGAGGTGACACCCCATCAATTCCATGGAGAATGAGATTCAAAATAGCAGCAGAGATTGCCACTGCACTTCTATTCCTCCACCAGGCAAAGCCAGAGCCTTTTGTGCACAGAGACCTAAAGCCAGCCAACATCCTCCTAGATCGAAACTATGGACATTTTGTTACATTGATCCAGAGTATCAACAAACAGAAAGGGACATTCGCGGATATGCTTGATCAGACAGTTCCTGACTGGCCGGTTGAAGAGGCGCTGGCTTTTGCCAACCTAGCACTAAAATGTTCTGAGCTGAGGAAAAAGGACAGGCCTGATCTTGGTTCTGTTGTATTGCCAGAGCTTAACCGGTTGAGTGGCTTTGGCATGGACAGTTCTGGACCAGATAACAGTAGTAACATGTTTAATGGCTATGCGTCGTATACTCACAGATCCGGTTCACATCCAAGGCTCTCAAGTACTGCAAGCCAGGACTAA 1998 45.8 MALHFAFDDGIAPINSTVVAIDKDKNSHYAVRWTIDHLLINNPQIILIHVRHKYLQHQGYNAGEGGGESETDAQQLFIAYRGYCARKAIQLKEIVLDDVDVSRAIIDYITRNRIKNIVVGASTKNALTRKFRNYDVSTSITKSAPDFCSVYVISKGKVVSVRSAQRPVVNTAVPPKLPSPRGLPPQALPDNPELEDVARIQSLKGWRNVGSERVTFERTNNNMRVPRARSAPTNLSIDNIDLQRPSTSRDSVSDDLDFSTPIRFASVDLSSQDMDFSITSDSGRDSLTPTSAKELAAEMKRLKLELKQTMDMYSTACKEAITAKQKAKELHQWRMEEARRFKEARLSEEAALAMAEMEKARCKAAIEAAEVAQKLAEKEAQRRRYAELKASREAEEKARALTALAHNDVRYRKYAIEEIEVATEKFSQAMKIGEGGYGPVYRGKLDHTPVAIKVLRPDAAQGMRQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMSNGSLEDRLLRRGDTPSIPWRMRFKIAAEIATALLFLHQAKPEPFVHRDLKPANILLDRNYGHFVTLIQSINKQKGTFADMLDQTVPDWPVEEALAFANLALKCSELRKKDRPDLGSVVLPELNRLSGFGMDSSGPDNSSNMFNGYASYTHRSGSHPRLSSTASQD* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1115012 1118921 - Vvi4g112 Vvi4g112 784891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g112 665 MobiDBLite consensus disorder prediction 173 187 - -
Vvi4g112 665 MobiDBLite consensus disorder prediction 630 665 - -
Vvi4g112 665 Pfam Protein kinase domain 427 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g112 665 CDD STK_N 16 156 - -
Vvi4g112 665 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 560 - -
Vvi4g112 665 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 569 654 - -
Vvi4g112 665 SMART serkin_6 426 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g112 665 PANTHER OS02G0152300 PROTEIN 569 654 - -
Vvi4g112 665 PANTHER OS02G0152300 PROTEIN 16 560 - -
Vvi4g112 665 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 153 - -
Vvi4g112 665 Gene3D Transferase(Phosphotransferase) domain 1 499 568 - -
Vvi4g112 665 Gene3D HUPs 13 153 IPR014729 -
Vvi4g112 665 Gene3D Phosphorylase Kinase; domain 1 404 498 - -
Vvi4g112 665 Coils Coil 343 398 - -
Vvi4g112 665 Coils Coil 292 312 - -
Vvi4g112 665 Pfam Universal stress protein family 18 145 IPR006016 -
Vvi4g112 665 MobiDBLite consensus disorder prediction 171 191 - -
Vvi4g112 665 ProSiteProfiles Protein kinase domain profile. 426 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g112 665 SUPERFAMILY Protein kinase-like (PK-like) 410 560 IPR011009 -
Vvi4g112 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g112 Vvi9g141 ECH
Vvi4g112 Vvi11g145 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76591 PF00069 Pkinase 3.90E-24 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g112 - - vvi:100254330 1072.77