Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1121 ATGGCTCCACCTCAAATTCCAATCCTGCTTCTCCAGCTCCTATTTCTCTTTTCAGGTGCATTTTCAGCGACATTTACGATAGTTAACAAGTGCAGCTACCCAGTGTGGCCGGGTATCTTATCAAACGCTGGAACAGCACAGCTCCCCACCACTGGTTTTGCTCTCCAACCTGATGAGTCCAATTCCCTATCCCTCCCTACTGCCTGGTCAGGTCGGTTGTGGGGTAGAACACTCTGTAGCGCCGACTCTGCTGGTAAGTTCACTTGTATCACCGGCGACTGCGGCTCCGGTACATTGGAATGCTCTGGTGGCGGTGCCGCCCCACCCGCCACCTTAGCAGAGTTCACCCTGAACGGCGCCAATGGCCTCGACTTCTATGATGTCAGCCTGGTGGACGGCTATAACCTCCCCATGTTGGTGGCACCTCAGGGTGGCACCGGGGGTAACTGTACTATCACCGGTTGCGTCGCTGACCTAAACGCGGCTTGTCCGTCGGAGCTCAAAGTGAGCAGCATCGAAGGCGGTGAGGGGAGTGAGAGCGTGGCATGCAAAAGCGCGTGTGAGGCGTTTGGGGATGCGCAGTACTGCTGCAGCGGGGCGTACGCGACTCCAGACACGTGTAAGCCCAGTGCATATTCTGAGTACTTCAAAAGCGCCTGCCCCCGTGCTTACAGCTACGCCTACGATGATGGTAGCAGCACCTTCACCTGTGCATCTGCCGATTACACCATCACTTTCTGCCCTTCTCCTGCCACCAGTCAGAAATCGGCGGGAGGGCAGTATCCTCAGGCGATGGAAGTCTCAGCGGCTGCTGCCAATCGTTTCACGTCATTCAACTCCATCATTGCCGTCGCTGTCGCCACCGTAGCCGCAATTTGGCAATGGCGGTAG 891 56.57 MAPPQIPILLLQLLFLFSGAFSATFTIVNKCSYPVWPGILSNAGTAQLPTTGFALQPDESNSLSLPTAWSGRLWGRTLCSADSAGKFTCITGDCGSGTLECSGGGAAPPATLAEFTLNGANGLDFYDVSLVDGYNLPMLVAPQGGTGGNCTITGCVADLNAACPSELKVSSIEGGEGSESVACKSACEAFGDAQYCCSGAYATPDTCKPSAYSEYFKSACPRAYSYAYDDGSSTFTCASADYTITFCPSPATSQKSAGGQYPQAMEVSAAAANRFTSFNSIIAVAVATVAAIWQWR* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20085217 20086815 + Vvi4g1121 Vvi4g1121 785900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1121 296 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi4g1121 296 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi4g1121 296 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vvi4g1121 296 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vvi4g1121 296 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vvi4g1121 296 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 4 267 - -
Vvi4g1121 296 PIRSF PR5 3 293 IPR001938 -
Vvi4g1121 296 ProSiteProfiles Thaumatin family profile. 22 248 IPR001938 -
Vvi4g1121 296 CDD TLP-PA 24 247 - -
Vvi4g1121 296 Pfam Thaumatin family 29 248 IPR001938 -
Vvi4g1121 296 SMART tha2 25 248 IPR001938 -
Vvi4g1121 296 Gene3D Thaumatin 23 248 IPR037176 -
Vvi4g1121 296 PANTHER OS03G0233200 PROTEIN 4 267 IPR001938 -
Vvi4g1121 296 SUPERFAMILY Osmotin, thaumatin-like protein 23 249 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g138 Vvi4g1121 ECH
Vvi4g1121 Vvi18g1130 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1121 - - vvi:100264253 575.089