Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1122 ATGGGTCAAGTTTCTGCCTTCTCCTCCTCCTCTCCTTCTCTCGTCATCGTCCTCAGTCTTCTTCTCATCTTATTCATTTCTGAAGGTGTTTCGGGTTCTACATTTACGTTTCTGAACAGGTGTGACTTCACGGTATGGCCGGGAATTCTAGACAGCGCTGGTAGCCCAAAGCTGGAAACTACAGGGTTTGTGTTACCCAAGGGTAGTTCACGTGGCTTCCAAGCTCCGACGGGCTGGTCAGGTCGCTTCTGGGGCAGAACCGGCTGTAATTTTGATGGGTCGGGCCACGGTACATGCGCCACCGGAGACTGTGGGTCCGGTCAGGTAGAGTGCAACGGCGCTGGAGCTTCCCCGCCGGCGACACTCGCTGAGTTCACTCTCGGCTCTGGTAGTCAAGACTATTACGACGTCAGTCTCGTAGATGGCTACAATCTGCCAATGATGGTCGAAGGCAGGAGCAAATCGGGTGCTTGCACGTCCACCGGGTGCGTCACCGACCTGAATCGCCGGTGCCCGAATGAATTGAAGGTTGAGGGTGGTGAGGCGTGTAAGAGCGCCTGCGAGGCGTTCGGCAGCCCGGAGTACTGCTGCAGCGGCGCGTACAACACACCGTCGACGTGTAAGCCGTCGGTGTACTCTGAGATATTCAAGTCTGCGTGCCCCAGATCATACAGTTACGCTTATGATGATGCCACCAGCACTTTCACCTGTAACGGAGCCGATTACACCATCACATTCTGTCCTTCCTCTCCCAGCCAAAAATCTTCCAAGGATTCTCCAAGAGAAACGGGAACAACACCAGATAGTGGGTCAGGGTCAGGGTCAGGGTCAGGGCCAGAATCAGAATCGGCTTTAGCGTCGGCAGAGGGCACGATGCTAGCCAATTCTTGGTTAGCAAACTTGGCAACCGGTGCCAGTGGTACAGCCAGGAGCCACCCATGTTTAACACTACACTCTGGATTTGTTGTTGCAATCTTCTCATTAGTCCTTCCTTTTTTGGTAGGGTAG 1008 54.07 MGQVSAFSSSSPSLVIVLSLLLILFISEGVSGSTFTFLNRCDFTVWPGILDSAGSPKLETTGFVLPKGSSRGFQAPTGWSGRFWGRTGCNFDGSGHGTCATGDCGSGQVECNGAGASPPATLAEFTLGSGSQDYYDVSLVDGYNLPMMVEGRSKSGACTSTGCVTDLNRRCPNELKVEGGEACKSACEAFGSPEYCCSGAYNTPSTCKPSVYSEIFKSACPRSYSYAYDDATSTFTCNGADYTITFCPSSPSQKSSKDSPRETGTTPDSGSGSGSGSGPESESALASAEGTMLANSWLANLATGASGTARSHPCLTLHSGFVVAIFSLVLPFLVG* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20090879 20092677 + Vvi4g1122 Vvi4g1122 785901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1122 335 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Vvi4g1122 335 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Vvi4g1122 335 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Vvi4g1122 335 PRINTS Pathogenesis-related protein signature 133 149 IPR001938 -
Vvi4g1122 335 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vvi4g1122 335 ProSiteProfiles Thaumatin family profile. 32 248 IPR001938 -
Vvi4g1122 335 PANTHER OS03G0233200 PROTEIN 12 270 IPR001938 -
Vvi4g1122 335 ProSitePatterns Thaumatin family signature. 95 111 IPR017949 -
Vvi4g1122 335 SMART tha2 35 248 IPR001938 -
Vvi4g1122 335 Pfam Thaumatin family 39 248 IPR001938 -
Vvi4g1122 335 Gene3D Thaumatin 33 248 IPR037176 -
Vvi4g1122 335 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 12 270 - -
Vvi4g1122 335 MobiDBLite consensus disorder prediction 249 285 - -
Vvi4g1122 335 CDD TLP-PA 34 247 - -
Vvi4g1122 335 SUPERFAMILY Osmotin, thaumatin-like protein 34 249 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1122 - - - vvi:100247111 643.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1122 Vvi18g1131 ECH
Vvi3g139 Vvi4g1122 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116