Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1123 ATGGAAGCTACGAGCACTATGACCCCGAGGGCCTCGACTCTGAGATGGGAAATTCTTCGGCGCGCCGTTCTTCGTCGACCACCTCCACAACCTGATGATCAATCTCGAATCGGCATCAATCGTATTTCTAGGAAGACATCTCACGGCTTTAACTTGATTCCTCATCATCTAATGGACGGCCACGATGAACATTTTTCCGGTTCGGATCGTTCCAGAGATGCTCGTATTTGCTATACATTGCCTGTTGAATCAGCTTCTAAACTTTATCTTACCCAAAGAGTGGATGACCGTGCGAACCTCAATGATTTTGAGATCTGTAATAGATATGATATTGACAACACTGGGCTTGTTTGTCACTGGCCATCAGAAGATATCCTTGCTTATTTTTGCTTGTCACACACAGACATGTTCAGGTCTAAAAAGGTTATTGAACTTGGATCAGGCTATGGCTTAGCTGGATTAGTTATTGCAGCAGTCACTGATGCATTAGAAATTGTAATATCAGATGGAAATCCTCAAGTTGTTGATTATATTCAGCATAATATTGATGCCAATTGTGGAGCATTTGGTGATACCAGAGTGAAGTCCATGACCTTGCACTGGAATCAAGAAGAAATCTCAAATATCTCTGACACTTACGACATCATTGTTGCAAGTGACTGCACTTTCTTCAAGGAATCTCACAAAGGCCTTGCTCGAACTGTCAAATTCCTACTGAAAAATGGACCCTCTGAAGCTATATTTCTCAGCCCTAGAAGAGGTGATTCATTGGACAAGTTTCTAGATATAATCAAACAGAGTGGCTTGCATTTCAGCATATCCGAAAACTATGACACAGAAGTTTGGAAGCGTCATCAAGAACTCATGAATGGTGATGACTCCTGGCCCAACTACGAAGTGGATCATTGCTACCCATTATTGGTCAGAATAACACACTAA 939 41.96 MEATSTMTPRASTLRWEILRRAVLRRPPPQPDDQSRIGINRISRKTSHGFNLIPHHLMDGHDEHFSGSDRSRDARICYTLPVESASKLYLTQRVDDRANLNDFEICNRYDIDNTGLVCHWPSEDILAYFCLSHTDMFRSKKVIELGSGYGLAGLVIAAVTDALEIVISDGNPQVVDYIQHNIDANCGAFGDTRVKSMTLHWNQEEISNISDTYDIIVASDCTFFKESHKGLARTVKFLLKNGPSEAIFLSPRRGDSLDKFLDIIKQSGLHFSISENYDTEVWKRHQELMNGDDSWPNYEVDHCYPLLVRITH* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20094624 20105285 - Vvi4g1123 Vvi4g1123 785902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1123 312 PANTHER CALMODULIN-LYSINE N-METHYLTRANSFERASE 6 311 IPR025800 GO:0005737|GO:0018025
Vvi4g1123 312 CDD AdoMet_MTases 141 242 - -
Vvi4g1123 312 Pfam Lysine methyltransferase 122 266 IPR019410 -
Vvi4g1123 312 Gene3D Vaccinia Virus protein VP39 42 312 IPR029063 -
Vvi4g1123 312 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 276 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1123 K18826 CAMKMT; calmodulin-lysine N-methyltransferase [EC:2.1.1.60] - vvi:100252234 642.499
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1123 . . . . . . . . . . . Cma07g00419 . Car07g00368 . Cpe19g00865 . Bhi03g00850 . . . . . . . . . . . . . . . Cone6ag1688 Cone9ag1610 Lsi01g00593 . . Cme08g00939 Blo05g00708 . . . . Bpe06g00131 . . . . Cmo07g00416 . . . . . . . . . . . . . . . . . . . . . Csa06g03336 Chy02g00563 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005598 0 9 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 4 1 1 38