Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1126 ATGGAAGAAGCCTCAGCAATTGGGTTGCCAGAGGCGTTTCTGGATTTTCTGAAGGAGAATGGTGTGGATCCTTCGATATATACAACAGCCGATTCAACGCCTCGATATATAAGGTTGAAACCCGGTAGCATTAGTGAAGCACAAATCCAACAGCTAGAAGCTGAATTCAAGTCGAAGCTTGAGAAAGTGGGTTGGTTACCGAATTTCTACTCTCTTCCACCCCAGATTCACATTGCAAACTCCATGGCTTACAAGGAAGGGAAGATATATGGAATTGATGCAGCTTCTGGGGCGGCTGTTTCAGCTTTAAATGTCTCTGAGGGAGATCATGTTCTTGATCTGTGTGCTGCTCCTGGTGCTAAACTTTGTATGACGTTAGACCTTATTGGTAATTCGGGTTCTGTAACTGGTGTCGATGTTGCAAGACATCGTTTAGCTGCTTGTAGAACAATGATTCAGAAATATGCACTGGGAGATAGGTGTCGCCTCTTTGTTGCTGATGGAACAACATTTTCCCTCATTCCTGTGATGGAACATTCAGATTCAAAATCAGGTGGAAAGGTGGATGTATTTAAGGAGTGGACTTCTAAAAGACCATGGAAAGAAAGGAAAAATGCAAAGAAAGCTAGGGAAGGCATTGTGATTGGTCTTAGTAGAACTGAACTATATAAAATTGCATGTGACAGTGAGGTGTTGAAGTGTGGCTATGACAAGGTCCTTGTTGATGCAGAATGCACTCATGATGGGTCAATTAGACATATCCAAAAATTTGACCATTGGGGATGGGAAACACTTGAGCGCCGTGTATTAGATGCAGAGAGGACTGATAGCTTAACCGTTCTTCAGTTCCGGCTTCTAAGTAATGGTTTTAGATTACTAAAAGTTGGGGGATCACTTGTCTACAGCACGTGCAGTTTGACAGCTGCTCAGAATGAAGATGTGGTAGAACAATTTCTTCGGGAAAATGCTTCTGCTGAGTTGCAGGAGATAGATGCTGCCACAAACTGGCCTTGCAAAAGTGGTGGGATACCAAAGACGTTACGGTTTGATCCCTTGACCTCTCAAACCAGTGGGCTTTTTGTCGCCAAGTTCACAAAATTGGCCAGTTAG 1110 43.42 MEEASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEKVGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKLCMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDSKSGGKVDVFKEWTSKRPWKERKNAKKAREGIVIGLSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTDSLTVLQFRLLSNGFRLLKVGGSLVYSTCSLTAAQNEDVVEQFLRENASAELQEIDAATNWPCKSGGIPKTLRFDPLTSQTSGLFVAKFTKLAS* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20111684 20116188 - Vvi4g1126 Vvi4g1126 785905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1126 369 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 4 367 IPR023267 GO:0001510
Vvi4g1126 369 CDD AdoMet_MTases 111 176 - -
Vvi4g1126 369 Gene3D Vaccinia Virus protein VP39 5 366 IPR029063 -
Vvi4g1126 369 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 4 367 - -
Vvi4g1126 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 366 IPR029063 -
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase signature 83 97 IPR023267 GO:0001510
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase signature 112 122 IPR023267 GO:0001510
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase signature 237 249 IPR023267 GO:0001510
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase signature 296 312 IPR023267 GO:0001510
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase signature 349 366 IPR023267 GO:0001510
Vvi4g1126 369 Pfam 16S rRNA methyltransferase RsmB/F 101 171 IPR001678 GO:0008168
Vvi4g1126 369 Pfam 16S rRNA methyltransferase RsmB/F 231 364 IPR001678 GO:0008168
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 9 27 IPR023269 -
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 137 154 IPR023269 -
Vvi4g1126 369 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 257 276 IPR023269 -
Vvi4g1126 369 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 25 367 IPR001678 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1126 - - - vvi:100267747 721.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1126 . . . Bda10g00189 . . . . . . Cma03g00678 . Car03g00626 . Sed05g0671 . . Bhi03g00848 Tan03g2092 Cmetu04g1543 . Hepe04g1601 . . . . . . . . . . . Cone6ag1689 Cone9ag1611 Lsi01g00592 . . Cme08g00941 . Blo06g00294 . . Bpe10g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03339 Chy02g00561 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014670 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 0 0 0 0 1 19