Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1127 ATGCTCATAAAGTCAATATTTTCTAAGAAAATTAATGCTATAAATGGATGGGTAGAGGGAGGAAGAATAGTTTTCTGTGATATTGATATTTTCTTTAGAGCTGAATTTATCGGGCGAAAGCTGTGTGCTAGGGTTGTGGTGGGTTTTGGGTTTTGGGTTTTGAATCAGACATTTATGTCGACCGCTGCAGCCAAAGCCCTTGCTGGAATTCTAGTGTTTGTTTCTTACTCTGTTCGCCTCACCTACGCTATTGTTCACCTCAAATCCTTGTCCGCTTCCTTCATTGACGCTCCCGCCAGATTTGCTGTTAGTGTTAACAGCACTGGAATATGCGGAGCTTTGCATTTGGCAGATCCTCTCGAGGCATGTTCTTCTCTGCTCAACAGGTTTCGATCCCAAGAAATTGATACAATAAAATTTGCTCTGATAATTAGGGGTAAATGTGCTTTTGAGGATAAAGTCCGAAATGCTCAAGATGCTGGCTTTCATGCTGTAATCGTGTATGATGATCGAGATAAGGGGAATTTGGTTTCCATGATAGGAAACTCCCAGGGCATATGGGTGCCTGCAGTTTTTGTTTCTAAGGCAGCTGGTGAAACCCTGAAGATATATGCTCAAGGACAAGAAGGGGAATGCTGCATTATAAACCCTTCATTCCCAGAATCTGCCTGGACTGTGATGGTAATATCTTTCATCTCACTTCTTGTCATAGCAACTGTCGTGTTAACGTTCTTCCTCACTCGCAACCGCCGGTTGAATCAACGAGGAACAAATCCCCACCGTCCTAGTGTGGATGCCAAGTTGGTGGAAGTTCTTCCCTGCTTTACATTCAGTCAAGCATGTGAGTGCCGCGTAGGAGATACATGTTCCATCTGTCTTGAGGACTACAAAGATGGTGAACGGCTCAGAGTTCTCCCCTGCCAACATGAATTTCACGCGAGCTGTGTGGACTCATGGCTTACAAAGTGGGGGACTTTCTGCCCGGTTTGTAAATATGATTTGAGTACTGATGCCACATGTTCTAAAGTGAATGAGAGGAGAACATTTTTATTTTTTTAG 1059 43.53 MLIKSIFSKKINAINGWVEGGRIVFCDIDIFFRAEFIGRKLCARVVVGFGFWVLNQTFMSTAAAKALAGILVFVSYSVRLTYAIVHLKSLSASFIDAPARFAVSVNSTGICGALHLADPLEACSSLLNRFRSQEIDTIKFALIIRGKCAFEDKVRNAQDAGFHAVIVYDDRDKGNLVSMIGNSQGIWVPAVFVSKAAGETLKIYAQGQEGECCIINPSFPESAWTVMVISFISLLVIATVVLTFFLTRNRRLNQRGTNPHRPSVDAKLVEVLPCFTFSQACECRVGDTCSICLEDYKDGERLRVLPCQHEFHASCVDSWLTKWGTFCPVCKYDLSTDATCSKVNERRTFLFF* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20116691 20121210 + Vvi4g1127 Vvi4g1127 785906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1127 352 Pfam PA domain 139 201 IPR003137 -
Vvi4g1127 352 Pfam Ring finger domain 287 331 IPR001841 -
Vvi4g1127 352 SUPERFAMILY RING/U-box 286 337 - -
Vvi4g1127 352 SUPERFAMILY PA domain 139 205 IPR046450 -
Vvi4g1127 352 SMART ring_2 289 330 IPR001841 -
Vvi4g1127 352 Gene3D - 73 214 - -
Vvi4g1127 352 ProSiteProfiles Zinc finger RING-type profile. 289 331 IPR001841 -
Vvi4g1127 352 CDD PA_C_RZF_like 89 223 IPR044744 -
Vvi4g1127 352 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 68 333 - -
Vvi4g1127 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Vvi4g1127 352 PANTHER RECEPTOR HOMOLOGY REGION, TRANSMEMBRANE DOMAIN- AND RING DOMAIN-CONTAINING PROTEIN 1 68 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1127 K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] - vvi:100245428 597.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1127 Vvi18g109 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069897 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1