Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1128 ATGGATTCTGAGAAAAGCCCAGCAACAGAATTTATCAGCGCTGATGCTCATGAAGCTAAGGATCTTATTGCCTCCGGCTATAGATACCTAGATGTTAGGATGGTGGAAGATTTCAACAAAGGCCATGTGGATGTTGAGAGCGTCTTTAACATCGCTTACTTCATCATGACCCCAGAGGGTAGGGTGAAAAATCCTCAATTTTTGGAGCAGGTTTTGTCGGTTTGCAGCAAGGAAGATGGTCTCATTGTGGGCTGTGGAACCGGGGACAGGTCTCGTCTTGCAACGGTTGATCTTCTTAATGCTGATTTCAAACACGTAAGGAACATGGGAGGAGGATATCGATCCTGGCACGAGGCTGGATTGGGCGTGAAGAAAGAGGCTTGA 384 46.88 MDSEKSPATEFISADAHEAKDLIASGYRYLDVRMVEDFNKGHVDVESVFNIAYFIMTPEGRVKNPQFLEQVLSVCSKEDGLIVGCGTGDRSRLATVDLLNADFKHVRNMGGGYRSWHEAGLGVKKEA* 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20121867 20123157 + Vvi4g1128 Vvi4g1128 785907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1128 127 ProSiteProfiles Rhodanese domain profile. 23 125 IPR001763 -
Vvi4g1128 127 Gene3D - 2 124 IPR036873 -
Vvi4g1128 127 Pfam Rhodanese-like domain 16 119 IPR001763 -
Vvi4g1128 127 SMART rhod_4 14 122 IPR001763 -
Vvi4g1128 127 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 11 123 IPR036873 -
Vvi4g1128 127 CDD RHOD 18 116 - -
Vvi4g1128 127 PANTHER THIOSULFATE SULFURTRANSFERASE 18 6 126 IPR044684 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1128 - - K15692 vvi:100250555 259.996
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1128 . . . . . . . . . . . . . . . . Cpe10g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00703 . . Cma20g00760 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002828 1 2 0 0 1 1 3 2 2 1 1 1 1 2 1 2 2 2 3 1 2 2 2 1 3 3 1 4 2 3 52